Kitware Staff Publications

The experts here at Kitware are very passionate about their research and sharing their findings with the world when they can. That’s why we support and encourage them to publish their novel work, whether through participating in national and international conferences, academic journals, and more.

The following publications list is a compilation of all of the papers and articles published by Kitware employees.

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Publications

C. Cinel, "Linearly Sofic Lie Algebras: Extensions and Embeddings," Journal of Algebra and Its Applications, pp. S0219498825503566, Jul. 2024. [URL]
A. Schmidt, P. Morales-Álvarez, L. Cooper, L. Newberg, A. Enquobahrie, R. Molina, and A. Katsaggelos, "Focused active learning for histopathological image classification," Medical Image Analysis, vol. 95, pp. 103162, Jul. 2024. [URL]
W. Schroeder, S. Tsalikis, M. Halle, and S. Frisken, "A High-Performance SurfaceNets Discrete Isocontouring Algorithm," arXiv, Jan. 2024. [URL]
F. Yellin, S. McCloskey, C. Hill, E. Smith, and B. Clipp, "Concurrent Band Selection and Traversability Estimation from Long-Wave Hyperspectral Imagery in Off-Road Settings," in 2024 IEEE/CVF Winter Conference on Applications of Computer Vision (WACV), 2024. [URL]
C. Greenwell, J. Crall, M. Purri, N. Jacobs, A. Hadzic, S. Workman, and M. Leotta, "WATCH: Wide-Area Terrestrial Change Hypercube," in Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision (WACV), 2024. [URL]
S. Amin, H. Dewey, A. Lasso, P. Sabin, Y. Han, J. Vicory, B. Paniagua, C. Herz, H. Nam, A. Cianciulli, M. Flynn, D. Laurence, D. Harrild, G. Fichtinger, M. Cohen, and M. Jolley, "Euclidean and Shape-Based Analysis of the Dynamic Mitral Annulus in Children using a Novel Open-Source Framework," Journal of the American Society of Echocardiography, vol. 37, no. 2, pp. 259-267, Feb. 2024. [URL]
B. Hu, B. Ray, A. Leung, A. Summerville, D. Joy, C. Funk, and A. Basharat, "Language Models are Alignable Decision-Makers: Dataset and Application to the Medical Triage Domain," arXiv, 2024. [URL]
M. Gillot, F. Miranda, B. Baquero, A. Ruellas, M. Gurgel, N. Al Turkestani, L. Anchling, N. Hutin, E. Biggs, M. Yatabe, B. Paniagua, J. Fillion‐Robin, D. Allemang, J. Bianchi, L. Cevidanes, and J. Prieto, "Automatic landmark identification in cone‐beam computed tomography," Orthodontics & Craniofacial Research, vol. 26, no. 4, pp. 560-567, Nov. 2023. [URL]
A. Mankowski, P. Gurram, J. Crall, S. McCloskey, and A. Hoogs, "Transformers for Small Object Detection and Tracking in OPIR Imagery," in Proceedings of the National Security Sensor and Data Fusion Committee, 2023.
C. Funk, D. Depauw, K. Fieldhouse, and E. Blasch, "Fog-Assisted Autoencoder for Enhanced Multi-INT Targeting," in Proceedings of the National Security Sensor and Data Fusion Committee (NSSDF), 2023.
J. Parham, D. Joy, P. Gurram, S. Brockman, R. Blue, A. Hoogs, B. Minnehan, S. Thomas, C. Liberatore, R. Profeta, and T. Rovito, "From Commercial Satellites to National Defense: A Review of VIGILANT for Object Detection, Classification, Mensuration, and Patch-based Search in Satellite Imagery," in Proceedings of the National Security Sensor and Data Fusion Committee (NSSDF), 2023.
K. Regmi, M. Kirchner, and A. Basharat, "Generalizable synthetic image detection," in Proceedings of the National Security Sensor and Data Fusion Committee (NSSDF), 2023.
D. Davila, D. Melamed, D. Depauw, and J. Anderson, "Multi-ATR Fusion and Ontological Deconfliction for Geospatial Imagery," in Proceedings of the National Security Sensor and Data Fusion Committee (NSSDF), 2023.
D. Melamed, C. Johnson, S. Brockman, R. Blue, A. Hoogs, P. Morrone, and B. Clipp, "Rapid Training of Artificial Intelligence Battle Damage Assessment Tools to New Conflicts," in Proceedings of the National Security Sensor and Data Fusion Committee (NSSDF), 2023.
C. Funk, B. Clipp, and A. Hoogs, "Scale-MAE: A Scale-Aware Masked Autoencoder for Multiscale Geospatial Representation Learning.," in Proceedings of the National Security Sensor and Data Fusion Committee (NSSDF), 2023.
S. McCloskey, B. RichardWebster, R. Collins, and A. Hoogs, "Subject Identification up to 1km: Performer Perspective on the IARPA BRIAR Program," in Proceedings of the National Security Sensor and Data Fusion Committee (NSSDF), 2023.
J. Webb, A. Bray, and R. Clipp, "Design and Implementation of a Generic Circuit Solver for Physiological Lumped-Parameter Modeling," in 2023 Annual Modeling and Simulation Conference (ANNSIM), 2023. [URL]
H. Nam, M. Flynn, A. Lasso, C. Herz, P. Sabin, Y. Wang, A. Cianciulli, C. Vigil, J. Huang, J. Vicory, B. Paniagua, D. Allemang, D. Goldberg, M. Nuri, M. Cohen, G. Fichtinger, and M. Jolley, "Modeling of the Tricuspid Valve and Right Ventricle in Hypoplastic Left Heart Syndrome With a Fontan Circulation," Circulation: Cardiovascular Imaging, vol. 16, no. 3, Mar. 2023. [URL]
L. Condon, A. Farley, S. Jourdain, P. O’leary, P. Avery, L. Gallagher, C. Chennault, and R. Maxwell, "ParFlow Sand Tank: A tool for groundwater exploration," Journal of Open Source Education, vol. 6, no. 61, pp. 179, Mar. 2023. [URL]
S. Montgomery, F. Li, C. Funk, E. Peethumangsin, M. Morris, J. Anderson, A. Hersh, and S. Aylward, "Detection of pneumothorax on ultrasound using artificial intelligence," Journal of Trauma and Acute Care Surgery, vol. 94, no. 3, pp. 379-384, Mar. 2023. [URL]
C. Funk and Y. Liu, "EscherNet 101," arXiv:2303.04208, Mar. 2023. [URL]
B. Hu, P. Tunison, B. RichardWebster, and A. Hoogs, "Xaitk-Saliency: An Open Source Explainable AI Toolkit for Saliency," Proceedings of the AAAI Conference on Artificial Intelligence, vol. 37, no. 13, pp. 15760-15766, Jun. 2023. [URL]
C. Zhao, D. Du, A. Hoogs, and C. Funk, "Open Set Action Recognition via Multi-Label Evidential Learning," in 2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 2023. [URL]
J. Xu, G. Thevenon, T. Chabat, M. McCormick, F. Li, T. Birdsong, K. Martin, Y. Lee, and S. Aylward, "Interactive, in-browser cinematic volume rendering of medical images," Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, vol. 11, no. 4, pp. 1019-1026, Jul. 2023. [URL]
C. Cinel, "Linearly sofic Lie algebras," Journal of Algebra and Its Applications, pp. 2450240, Jul. 2023. [URL]
I. Gerg and C. Cotner, "A Perceptual Metric Prior on Deep Latent Space Improves Out-Of-Distribution Synthetic Aperture Sonar Image Classification," in IGARSS 2023 - 2023 IEEE International Geoscience and Remote Sensing Symposium, 2023. [URL]
D. Du, C. Funk, K. Doctor, and A. Hoogs, "Novel Object Detection in Remote Sensing Imagery," in IGARSS 2023 - 2023 IEEE International Geoscience and Remote Sensing Symposium, 2023. [URL]
J. Lee, Y. Choe, S. Ardid, R. Abbasi-Asl, M. McCarthy, and B. Hu, "Editorial: Functional microcircuits in the brain and in artificial intelligent systems," Frontiers in Computational Neuroscience, vol. 17, pp. 1135507, Jan. 2023. [URL]
D. Du, A. Shringi, A. Hoogs, and C. Funk, "Reconstructing Humpty Dumpty: Multi-feature Graph Autoencoder for Open Set Action Recognition," in 2023 IEEE/CVF Winter Conference on Applications of Computer Vision (WACV), 2023. [URL]
S. Gerber, M. Niethammer, E. Ebrahim, J. Piven, S. Dager, M. Styner, S. Aylward, and A. Enquobahrie, "Optimal transport features for morphometric population analysis," Medical Image Analysis, vol. 84, pp. 102696, Feb. 2023. [URL]
S. Snarski and J. Webb, "Design Considerations for Staring Infrared Search and Track Projectile Tracking Systems," in SENSOR SYSTEM DESIGN & DEVELOPMENT, 2023. [URL]
J. Webb, J. VanPelt, E. Veenhuis, and S. Snarski, "Development and Analysis of the PitViper Infrared Projectile Tracking System for Direct and Indirect Fire Applications," in TARGETS, BACKGROUNDS, AND DISCRIMINATION, 2023. [URL]
J. Prior, M. Campbell, M. Dawkins, P. Mickle, R. Moorhead, S. Alaba, C. Shah, J. Salisbury, K. Rademacher, A. Felts, and F. Wallace, "Estimating precision and accuracy of automated video post-processing: A step towards implementation of AI/ML for optics-based fish sampling," Frontiers in Marine Science, no. 10, pp. p.1150651, Apr. 2023.
P. Sahu, J. Fishbaugh, J. Vicory, A. Khan, and B. Paniagua, "3D Fourier Domain Adaptation for Improving CBCT Tooth Segmentation Under Scanner Parameter Shift," in 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI), 2023. [URL]
M. Leclercq, A. Ruellas, M. Gurgel, M. Yatabe, J. Bianchi, L. Cevidanes, M. Styner, B. Paniagua, and J. Prieto, "Dentalmodelseg: Fully Automated Segmentation of Upper and Lower 3D Intra-Oral Surfaces," in 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI), 2023. [URL]
T. Osika, E. Ebrahim, M. Styner, M. Niethammer, T. Sawyer, and A. Enquobahrie, "Harmonization Benchmarking Tool for Neuroimaging Datasets," in 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI), 2023. [URL]
N. Khargonkar, B. Paniagua, and J. Vicory, "Skeletal Point Representations with Geometric Deep Learning," in 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI), 2023. [URL]
J. Vicory, C. Herz, M. Flynn, A. Cianciulli, P. Sabin, A. Lasso, M. Jolley, and B. Paniagua, "Skeletal modeling of the tricuspid valve via cylindrical parameterization," in Medical Imaging 2023: Image Processing, 2023. [URL]
J. Li et al., "MedShapeNet -- A Large-Scale Dataset of 3D Medical Shapes for Computer Vision," Computer Vision and Pattern Recognition, 2023. [URL]
Y. Han, J. Vicory, G. Gerig, P. Sabin, H. Dewey, S. Amin, A. Sulentic, C. Hertz, M. Jolley, B. Paniagua, and J. Fishbaugh, "Hierarchical Geodesic Polynomial Model for Multilevel Analysis of Longitudinal Shape," in Information Processing in Medical Imaging. Springer Nature Switzerland, 2023, pp. 810-821. [URL]
Y. Han, J. Fishbaugh, C. Gonzalez, D. Aboyotes, J. Vicory, S. Tang, and B. Paniagua, "Geodesic Logistic Analysis of Lumbar Spine Intervertebral Disc Shapes in Supine and Standing Positions," in Shape in Medical Imaging. Springer Nature Switzerland, 2023, pp. 188-200. [URL]
J. Fishbaugh, R. Zambrano, J. Schuman, G. Wollstein, J. Vicory, and B. Paniagua, "Modeling Longitudinal Optical Coherence Tomography Images for Monitoring and Analysis of Glaucoma Progression," in Shape in Medical Imaging. Springer Nature Switzerland, 2023, pp. 236-247. [URL]
J. Vicory, Y. Han, J. Prieto, D. Allemang, M. Leclercq, C. Bowley, H. Scheirich, J. Fillion-Robin, S. Pizer, J. Fishbaugh, G. Gerig, M. Styner, and B. Paniagua, "SlicerSALT: From Medical Images to Quantitative Insights of Anatomy," in Shape in Medical Imaging. Springer Nature Switzerland, 2023, pp. 201-210. [URL]
X. Liu, J. Li, D. Sun, R. Wang, T. Abdelzaher, M. Brown, A. Barricelli, M. Kirchner, and A. Basharat, "Unsupervised Image Classification by Ideological Affiliation from User-Content Interaction Patterns," arXiv, 2023. [URL]
D. Davila, D. Du, B. Lewis, C. Funk, J. Van Pelt, R. Collins, K. Corona, M. Brown, S. McCloskey, A. Hoogs, and B. Clipp, "MEVID: Multi-view Extended Videos with Identities for Video Person Re-Identification," in IEEE/CVF Winter Conference on Applications of Computer Vision (WACV), 2023. [URL]
C. Reed, R. Gupta, S. Li, S. Brockman, C. Funk, B. Clipp, K. Keutzer, S. Candido, M. Uyttendaele, and T. Darrell, "Scale-MAE: A Scale-Aware Masked Autoencoder for Multiscale Geospatial Representation Learning," in International Conference on Computer Vision 2023, 2023. [URL]
K. Ntatsis, N. Dekker, V. Van Der Valk, T. Birdsong, D. Zukić, S. Klein, M. Staring, and M. McCormick, "itk-elastix: Medical image registration in Python," in Python in Science Conference, 2023. [URL]
M. Gillot, B. Baquero, C. Le, R. Deleat-Besson, J. Bianchi, A. Ruellas, M. Gurgel, M. Yatabe, N. Al Turkestani, K. Najarian, R. Soroushmehr, S. Pieper, R. Kikinis, B. Paniagua, J. Gryak, M. Ioshida, C. Massaro, L. Gomes, H. Oh, K. Evangelista, C. Chaves Junior, D. Garib, F. Costa, E. Benavides, F. Soki, J. Fillion-Robin, H. Joshi, L. Cevidanes, and J. Prieto, "Automatic multi-anatomical skull structure segmentation of cone-beam computed tomography scans using 3D UNETR," PLOS ONE, vol. 17, no. 10, pp. e0275033, Oct. 2022. [URL]
É. Léger, S. Horvath, J. Fillion-Robin, D. Allemang, S. Gerber, P. Juvekar, E. Torio, T. Kapur, S. Pieper, S. Pujol, R. Bardsley, S. Frisken, and A. Golby, "NousNav: A low-cost neuronavigation system for deployment in lower-resource settings," International Journal of Computer Assisted Radiology and Surgery, vol. 17, no. 9, pp. 1745-1750, May 2022. [URL]
E. McCoy, S. Park, R. Patel, D. Ryan, Z. Mullen, J. Nesbitt, J. Lopez, B. Taylor-Blake, K. Vanden, J. Krantz, W. Hu, R. Garris, M. Snyder, L. Lima, S. Sotocinal, J. Austin, A. Kashlan, S. Shah, A. Trocinski, S. Pudipeddi, R. Major, H. Bazick, M. Klein, J. Mogil, G. Wu, and M. Zylka, "Development of PainFace software to simplify, standardize, and scale up mouse grimace analyses," PAIN, pp. 10.1097/j.pain.0000000000003187, May 2022. [URL]
D. Zukić, J. Cox, L. Kovach, J. Cole, J. Marron, T. Birdsong, and M. McCormick, "Bone Morphometry of Atlas-Segmented Mouse Femurs and Tibias," in 23rd International Workshop on Quantitative Musculoskeletal Imaging, 2022.
T. Birdsong, B. Paniagua, J. Cole, J. Cox, S. Marron, D. Zukić, J. Vicory, and M. McCormick, "Femur Atlas Generation and Shape Analysis with Deformable Surface Registration," in 23rd International Workshop on Quantitative Musculoskeletal Imaging, 2022.
S. Snarski, R. Barnes, N. Khan, J. Baker, and J. Webb, "Infrared search and track (IRST) for long-range, wide-area detect and avoid (DAA) on small unmanned aircraft systems (sUAS)," in Autonomous Systems: Sensors, Processing and Security for Ground, Air, Sea and Space Vehicles and Infrastructure 2022, 2022. [URL]
W. Schroeder, J. Waters, E. Bresciani, and R. Bujack, "Topological Segmentation of 2D Vector Fields," LEVIA'22, Jul. 2022.
D. Du, C. Funk, and A. Hoogs, "Novelty Detection in Remote Sensing Imagery," in IGARSS 2022 - 2022 IEEE International Geoscience and Remote Sensing Symposium, 2022. [URL]
D. Zukić, A. Haley, C. Lisle, J. Klo, K. Pohl, H. Johnson, and A. Chaudhary, "Medical Image Quality Assurance using Deep Learning," in Medical Imaging with Deep Learning, 2022. [URL]
D. Blount, E. Bohnett, J. Holmberg, J. Parham, S. Faryabi, Ö. Johansson, L. An, B. Ahmad, W. Khan, and S. Ostrowski, "Comparison of Two Individual Identification Algorithms for Snow Leopards after Automated Detection," Bioinformatics, Jan. 2022. [URL]
G. Lewis, H. Wee, J. Vicory, A. Armstrong, and J. Reid, "Virtual Simulation for Interactive Visualization of 3D Fracture Fixation Biomechanics," Journal of the American Academy of Orthopaedic Surgeons, vol. 30, no. 1, pp. e51-e58, Jan. 2022. [URL]
B. Ravichandran, R. Collins, K. Fieldhouse, K. Corona, and A. Hoogs, "From Leaderboard To Operations: DIVA Transition Experiences," in 2022 IEEE/CVF Winter Conference on Applications of Computer Vision Workshops (WACVW), 2022. [URL]
M. Leotta, D. Russell, and A. Matrai, "On the Maximum Radius of Polynomial Lens Distortion," in Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision (WACV), 2022. [URL]
T. Czernuszewicz, A. Aji, C. Moore, S. Montgomery, B. Velasco, G. Torres, K. Anand, K. Johnson, A. Deal, D. Zukić, M. McCormick, B. Schnabl, C. Gallippi, P. Dayton, and R. Gessner, "Development of a Robotic Shear Wave Elastography System for Noninvasive Staging of Liver Disease in Murine Models," Hepatology Communications, pp. hep4.1912, Feb. 2022. [URL]
J. Vicory, G. Garcia, J. Rhee, and A. Enquobahrie, "Toward automatic atlas-based surgical planning for septoplasty," International Journal of Computer Assisted Radiology and Surgery, vol. 17, no. 2, pp. 403-411, Feb. 2022. [URL]
A. Bray, R. Clipp, M. Qureshi, S. Mitran, and A. Enquobahrie, "gLBM: A GPU enabled Lattice Boltzmann Method Library," Journal of Open Source Software, vol. 7, no. 70, pp. 2555, Feb. 2022. [URL]
D. Prijatelj, S. Grieggs, J. Huang, D. Du, A. Shringi, C. Funk, A. Kaufman, E. Robertson, and W. Scheirer, "Human Activity Recognition in an Open World," arXiv:2212.12141, Dec. 2022. [URL]
J. Schwartz, C. Harris, J. Pietryga, H. Zheng, P. Kumar, A. Visheratina, N. Kotov, B. Major, P. Avery, P. Ercius, U. Ayachit, B. Geveci, D. Muller, A. Genova, Y. Jiang, M. Hanwell, and R. Hovden, "Real-time 3D analysis during electron tomography using tomviz," Nature Communications, vol. 13, no. 1, pp. 4458, Aug. 2022. [URL]
F. Yellin, E. Smith, M. Albright, and S. McCloskey, "Resolution Transfer for Object Detection from Satellite Imagery," in 2022 26th International Conference on Pattern Recognition (ICPR), 2022. [URL]
C. Zhao, F. Chen, X. Wu, C. Funk, and A. Hoogs, "1st ACM SIGKDD Workshop on Ethical Artificial Intelligence: Methods and Applications (EAI-KDD22)," in Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 2022. [URL]
B. Adhikari, Y. Scindia, L. Sordo Vieira, H. De Assis Lopes Ribeiro, J. Masison, N. Yang, L. Fonseca, M. Wheeler, A. Knapp, Y. Mei, B. Helba, C. Atkinson, W. Schroeder, B. Mehrad, and R. Laubenbacher, "Computational Modeling of Macrophage Iron Sequestration during Host Defense against Aspergillus," mSphere, vol. 7, no. 4, pp. e00074-22, Aug. 2022. [URL]
H. Ribeiro, L. Vieira, Y. Scindia, B. Adhikari, M. Wheeler, A. Knapp, W. Schroeder, B. Mehrad, and R. Laubenbacher, "Multi-scale mechanistic modelling of the host defence in invasive aspergillosis reveals leucocyte activation and iron acquisition as drivers of infection outcome," Journal of The Royal Society Interface, vol. 19, no. 189, pp. 20210806, Apr. 2022. [URL]
J. Vicory, P. Sahu, H. Wee, H. Nam, A. Chopra, S. Reid, G. Lewis, and S. Arikatla, "Automated fractured femur segmentation using CNN," in Medical Imaging 2022: Image Processing, 2022. [URL]
P. Sahu, S. Gerber, Q. Zhao, T. Nguyen, M. McCormick, B. Paniagua, and J. Vicory, "Thin shell demons for dental scan registration," in Medical Imaging 2022: Image Processing, 2022. [URL]
A. Wilson, H. Scheirich, B. Paniagua, R. White, T. Nyugen, and V. Arikatla, "A level set approach to high fidelity interactive bone shaving for virtual training of surgical osteotomies," in Medical Imaging 2022: Image-Guided Procedures, Robotic Interventions, and Modeling, 2022. [URL]
S. McCloskey, "Computational Imaging," in Multimedia Forensics. Springer Singapore, 2022, pp. 41-62. [URL]
M. Kirchner, "Sensor Fingerprints: Camera Identification and Beyond," in Multimedia Forensics. Springer Singapore, 2022, pp. 65-88. [URL]
C. Long, A. Basharat, and A. Hoogs, "Video Frame Deletion and Duplication," in Multimedia Forensics. Springer Singapore, 2022, pp. 333-362. [URL]
J. Vicory, C. Herz, D. Allemang, H. Nam, A. Cianciulli, C. Vigil, Y. Han, A. Lasso, M. Jolley, and B. Paniagua, "Statistical Shape Analysis of the Tricuspid Valve in Hypoplastic Left Heart Syndrome," in Statistical Atlases and Computational Models of the Heart. Multi-Disease, Multi-View, and Multi-Center Right Ventricular Segmentation in Cardiac MRI Challenge. Springer International Publishing, 2022, pp. 132-140. [URL]
S. Harrison, A. Bulysheva, B. Newman, M. Audette, R. Clipp, J. Webb, and M. Mitchum, "INTEGRATIVE PHYSIOLOGY-COUPLED PILOT-CENTERED FLIGHT SIMULATION," in ANNSIM ‘22, 2022. [URL]
J. Webb, A. Bray, H. Scheirich, J. VanPelt, R. Clipp, J. Gerard, and S. Frembgen, "IMPLEMENTATION OF A DYNAMIC AND EXTENSIBLE MECHANICAL VENTILATOR MODEL FOR REAL-TIME PHYSIOLOGICAL SIMULATION," in ANNSIM’22, 2022. [URL]
P. Sahu, J. Vicory, M. McCormick, A. Khan, H. Geha, and B. Paniagua, "Wavelet Guided 3D Deep Model to Improve Dental Microfracture Detection," in Applications of Medical Artificial Intelligence, 2022. [URL]
M. Dawkins, J. Crall, M. Leotta, T. O’Hara, and L. Siemann, "Towards Depth Fusion into Object Detectors for Improved Benthic Species Classification," in ICPR CVAUI 2022, 2022.
B. RichardWebster, B. Hu, K. Fieldhouse, and A. Hoogs, "Doppelganger Saliency: Towards More Ethical Person Re-Identification," in IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops, 2022. [URL]
S. Workman, M. Rafique, H. Blanton, and N. Jacobs, "Revisiting Near/Remote Sensing with Geospatial Attention," in In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2022. [URL]
R. Yu, D. Du, R. LaLonde, D. Davila, C. Funk, A. Hoogs, and B. Clipp, "Cascade Transformers for End-to-End Person Search," in Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2022. [URL]
P. Akiva, M. Purri, and M. Leotta, "Self-Supervised Material and Texture Representation Learning for Remote Sensing Tasks," in Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2022. [URL]
B. Hu, B. Vasu, and A. Hoogs, "X-MIR: EXplainable Medical Image Retrieval," in Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision (WACV), 2022. [URL]
D. Davila, J. VanPelt, A. Lynch, A. Romlein, P. Webley, and M. Brown, "ADAPT: An Open-Source sUAS Payload for Real-Time Disaster Prediction and Response with AI," in Workshop on Practical Deep Learning in the Wild, 2022. [URL]
S. Shiraz, K. Regmi, S. Vyas, Y. Rawat, and M. Shah, "Novel View Video Prediction using a Dual Representation," in 2021 IEEE International Conference on Image Processing (ICIP), 2021. [URL]
B. Hu, P. Tunison, B. Vasu, N. Menon, R. Collins, and A. Hoogs, "XAITK: The explainable AI toolkit," Applied AI Letters, Oct. 2021. [URL]
B. Vasu, B. Hu, B. Dong, R. Collins, and A. Hoogs, "Explainable, interactive content‐based image retrieval," Applied AI Letters, Nov. 2021. [URL]
R. Deleat-Besson, C. Le, N. Al Turkestani, W. Zhang, M. Dumont, S. Brosset, J. Carlos Prieto, L. Cevidanes, J. Bianchi, A. Ruellas, M. Gurgel, C. Massaro, A. Aliaga-Del Castillo, M. Ioshida, M. Yatabe, E. Benavides, H. Rios, F. Soki, G. Neiva, J. Fernando Aristizabal, D. Rey, M. Antonia Alvarez, K. Najarian, J. Gryak, M. Styner, J. Fillion-Robin, B. Paniagua, and R. Soroushmehr, "Automatic Segmentation of Dental Root Canal and Merging with Crown Shape," in 2021 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), 2021. [URL]
Z. Liu, J. Hong, J. Vicory, J. Damon, and S. Pizer, "Fitting unbranching skeletal structures to objects," Medical Image Analysis, vol. 70, pp. 102020, May 2021. [URL]
J. Masison, J. Beezley, Y. Mei, H. Ribeiro, A. Knapp, L. Sordo Vieira, B. Adhikari, Y. Scindia, M. Grauer, B. Helba, W. Schroeder, B. Mehrad, and R. Laubenbacher, "A modular computational framework for medical digital twins," Proceedings of the National Academy of Sciences, vol. 118, no. 20, pp. e2024287118, May 2021. [URL]
D. Zukić, M. Jackson, D. Dimiduk, S. Donegan, M. Groeber, and M. McCormick, "ITKMontage: A Software Module for Image Stitching," Integrating Materials and Manufacturing Innovation, Mar. 2021. [URL]
R. Clipp, A. Bray, B. Feiger, M. Qureshi, and J. Webb, "Recent Advances in the Pulse Physiology Engine," in SIAM Conference on Computational Science and Engineering, 2021. [URL]
J. Bianchi, A. Ruellas, J. Prieto, T. Li, R. Soroushmehr, K. Najarian, J. Gryak, R. Deleat-Besson, C. Le, M. Yatabe, M. Gurgel, N. Turkestani, B. Paniagua, and L. Cevidanes, "Decision Support Systems in Temporomandibular Joint Osteoarthritis: A review of Data Science and Artificial Intelligence Applications," Seminars in Orthodontics, vol. 27, no. 2, pp. 78-86, Jun. 2021. [URL]
R. Clipp, A. Bray, and J. Webb, "Recent Improvements to Hemorrhage Modeling in Full-Body Physiology Simulation," in Technical Proceedings of the International Meeting on Simulation in Healthcare, 2021. [URL]
Z. Falls, P. Avery, X. Wang, K. Hilleke, and E. Zurek, "The XtalOpt Evolutionary Algorithm for Crystal Structure Prediction," The Journal of Physical Chemistry C, vol. 125, no. 3, pp. 1601-1620, Jan. 2021. [URL]
J. Vicory, D. Allemang, D. Zukic, J. Prothero, M. McCormick, and B. Paniagua, "An open-source solution for shape modeling of objects of challenging topologies," in Medical Imaging 2021: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2021. [URL]
A. Kammardi Shashiprakash, B. Lutnick, B. Ginley, D. Govind, N. Lucarelli, K. Jen, A. Rosenberg, A. Urisman, V. Walavalkar, J. Zuckerman, M. Delsante, M. Bissonnette, J. Tomaszewski, D. Manthey, and P. Sarder, "A distributed system improves inter-observer and AI concordance in annotating interstitial fibrosis and tubular atrophy," in Medical Imaging 2021: Digital Pathology, 2021. [URL]
Y. Ye, S. Barapatre, M. Davis, K. Elliston, C. Davatzikos, A. Fedorov, J. Fillion-Robin, I. Foster, J. Gilbertson, A. Lasso, J. Miller, M. Morgan, S. Pieper, B. Raumann, B. Sarachan, G. Savova, J. Silverstein, D. Taylor, J. Zelnis, G. Zhang, J. Cuticchia, and M. Becich, "Open-source Software Sustainability Models: Initial White Paper From the Informatics Technology for Cancer Research Sustainability and Industry Partnership Working Group," Journal of Medical Internet Research, vol. 23, no. 12, pp. e20028, Dec. 2021. [URL]
N. Al Turkestani, J. Bianchi, R. Deleat‐Besson, C. Le, L. Tengfei, J. Prieto, M. Gurgel, A. Ruellas, C. Massaro, A. Aliaga Del Castillo, K. Evangelista, M. Yatabe, E. Benavides, F. Soki, W. Zhang, K. Najarian, J. Gryak, M. Styner, J. Fillion‐Robin, B. Paniagua, R. Soroushmehr, and L. Cevidanes, "Clinical decision support systems in orthodontics: A narrative review of data science approaches," Orthodontics & Craniofacial Research, vol. 24, no. S2, pp. 26-36, Dec. 2021. [URL]
M. Albright, N. Menon, K. Roschke, and A. Basharat, "Source Attribution of Online News Images by Compression Analysis," in 2021 IEEE International Workshop on Information Forensics and Security (WIFS), 2021. [URL]
M. Brown, K. Fieldhouse, A. Romlein, D. Davila, E. Borovikov, A. Lynch, and A. Hoogs, "Person Tracking, Re-identification, and Threat Detection by Autonomous Unmanned Systems within Complex Urban Environments," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2021.
M. Zecevic, R. Lebensohn, M. Rogers, J. Moore, V. Chiravalle, E. Lieberman, D. Dunning, G. Shipman, M. Knezevic, and N. Morgan, "Viscoplastic self-consistent formulation as generalized material model for solid mechanics applications," Applications in Engineering Science, vol. 6, pp. 100040, 2021.
K. Ovchinnikova, M. James, T. Mendo, M. Dawkins, J. Crall, and K. Boswarva, "Exploring the potential to use low cost imaging and an open source convolutional neural network detector to support stock assessment of the king scallop (Pecten maximus)," Ecological Informatics, no. 62, pp. p.101233, 2021.
U. Ayachit, A. Bauer, B. Boeckel, B. Geveci, K. Moreland, P. O’Leary, and T. Osika, "Catalyst Revised: Rethinking the ParaView in Situ Analysis and Visualization API," in High Performance Computing. Springer International Publishing, 2021, pp. 484-494. [URL]
J. Moore, "ELEMENTS: A Unified Framework for Supporting Low and High Order Numerical Methods for Multi-Physics Material Dynamics Simulations," PhD Thesis, Mississippi State University, 2021.
A. Butskova, R. Juhl, D. Zukić, A. Chaudhary, K. Pohl, and Q. Zhao, "Adversarial Bayesian Optimization for Quantifying Motion Artifact Within MRI," in Predictive Intelligence in Medicine. Springer International Publishing, 2021, pp. 83-92. [URL]
M. Audettea, S. Harrison, M. Frazier, N. Watkins, A. Tinelli, P. Clark, K. Neale, J. Webb, A. Bray, A. Bulysheva, B. Newman, and R. Clipp, "Toward a Coupled Integrative Physiology-Flight-OBOGS Simulation for the Analysis and Mitigation of Hypoxic Events in Fighter Aircraft," in Military Health System Research Symposium, 2021.
K. Corona, K. Osterdahl, R. Collins, and A. Hoogs, "MEVA: A Large-Scale Multiview, Multimodal Video Dataset for Activity Detection," in Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision (WACV), 2021. [URL]
M. Hanwell, C. Harris, A. Genova, M. Haghighatlari, M. El Khatib, P. Avery, J. Hachmann, and W. Jong, "Open Chemistry, JupyterLab , REST , and quantum chemistry," International Journal of Quantum Chemistry, Sep. 2020. [URL]
A. Fedorov, R. Beichel, J. Kalpathy-Cramer, D. Clunie, M. Onken, J. Riesmeier, C. Herz, C. Bauer, A. Beers, J. Fillion-Robin, A. Lasso, C. Pinter, S. Pieper, M. Nolden, K. Maier-Hein, M. Herrmann, J. Saltz, F. Prior, F. Fennessy, J. Buatti, and R. Kikinis, "Quantitative Imaging Informatics for Cancer Research," JCO Clinical Cancer Informatics, no. 4, pp. 444-453, Nov. 2020. [URL]
J. Webb, A. Bray, P. Asare, R. Clipp, Y. Mehta, S. Penupolu, and A. Patel, "Computational simulation to assess patient safety of uncompensated COVID-19 two-patient ventilator sharing using the Pulse Physiology Engine," PLoS ONE, Nov. 2020. [URL]
D. Ushizima, M. McCormick, and D. Parkinson, "Accelerating Microstructural Analytics with Dask for Volumetric X-ray Images," in 2020 IEEE/ACM 9th Workshop on Python for High-Performance and Scientific Computing (PyHPC), 2020. [URL]
Y. Chen-Wiegart, S. Campbell, K. Yager, Y. Liu, A. Frenkel, L. Yang, J. Bai, M. McCormick, D. Allan, and M. Basham, "Multi-Modal Synchrotron Characterization: Modern Techniques and Data Analysis," in Handbook on Big Data and Machine Learning in the Physical Sciences. WORLD SCIENTIFIC, 2020, pp. 39-64. [URL]
C. Pinter, A. Lasso, S. Choueib, M. Asselin, J. Fillion-Robin, J. Vimort, K. Martin, M. Jolley, and G. Fichtinger, "SlicerVR for Medical Intervention Training and Planning in Immersive Virtual Reality," IEEE Transactions on Medical Robotics and Bionics, vol. 2, no. 2, pp. 108-117, May 2020. [URL]
R. Choudhury, M. Aykol, S. Gratzl, J. Montoya, and J. Hummelshøj, "MaterialNet: A web-based graph explorer for materials science data," Journal of Open Source Software, vol. 5, no. 47, pp. 2105, Mar. 2020. [URL]
Y. Han, Y. Rabin, and L. Kara, "Soft tissue deformation tracking by means of an optimized fiducial marker layout with application to cancer tumors," International Journal of Computer Assisted Radiology and Surgery, vol. 15, no. 2, pp. 225-237, Feb. 2020. [URL]
B. Richards, A. Hoogs, M. Dawkins, J. Taylor, S. Smith, J. Ault, and M. Seki, "Advanced Camera Technologies and Artificial Intelligence to Improve Marine Resource Surveys," in Ocean Sciences Meeting, 2020. [URL]
A. Hoogs, M. Dawkins, B. Richards, G. Cutter, D. Hart, M. Clarke, W. Michaels, J. Crall, L. Sherrill, N. Siekierski, M. Woehlke, and K. Edwards, "An Open-Source System for Do-It-Yourself AI in the Marine Environment," in Ocean Sciences Meeting, 2020. [URL]
A. Powell, M. Clarke, M. Dawkins, B. Richards, and A. Hoogs, "Moving Towards Machine Learning for the Analysis of Deep-Sea Imagery Collected by Autonomous Underwater Vehicle," in Ocean Sciences Meeting, 2020. [URL]
D. Zukić and M. McCormick, "Web-based Registration Tools Based on ITKElastix," in One-page abstracts proceedings, 2020.
X. Zhang, Z. Sun, S. Karaman, and S. Chang, "Discovering Image Manipulation History by Pairwise Relation and Forensics Tools," IEEE Journal of Selected Topics in Signal Processing, vol. 14, no. 5, pp. 1012-1023, Aug. 2020. [URL]
P. Ercius, I. Johnson, H. Brown, P. Pelz, S. Hsu, B. Draney, E. Fong, A. Goldschmidt, J. Joseph, J. Lee, J. Ciston, C. Ophus, M. Scott, A. Selvarajan, D. Paul, D. Skinner, M. Hanwell, C. Harris, P. Avery, T. Stezelberger, C. Tindall, R. Ramesh, A. Minor, and P. Denes, "The 4D Camera – An 87 kHz Frame-rate Detector for Counted 4D-STEM Experiments," Microscopy and Microanalysis, vol. 26, no. S2, pp. 1896-1897, Aug. 2020. [URL]
B. Feiger, A. Wilson, S. Arikatla, R. Clipp, and A. Bray, "Simulation of arterial hemorrhage: Two-way coupling of a local high fidelity SPH model with a full body lumped parameter physiology model," APS Division of Fluid Dynamics, no. Fall 2020, pp. W09.012, 2020. [URL]
R. Grothausmann, D. Zukić, M. McCormick, C. Mühlfeld, and L. Knudsen, "Enabling Manual Intervention for Otherwise Automated Registration of Large Image Series," in Biomedical Image Registration. Springer International Publishing, 2020, pp. 23-33. [URL]
K. Tsai, R. Bujack, B. Geveci, U. Ayachit, and J. Ahrens, "Approaches for In Situ Computation of Moments in a Data-Parallel Environment," Eurographics Symposium on Parallel Graphics and Visualization, pp. 12 pages, 2020. [URL]
W. Scheirer, R. VidalMata, S. Banerjee, B. RichardWebster, M. Albright, P. Davalos, S. McCloskey, B. Miller, A. Tambo, S. Ghosh, S. Nagesh, Y. Yuan, Y. Hu, J. Wu, W. Yang, X. Zhang, J. Liu, Z. Wang, H. Chen, T. Huang, W. Chin, Y. Li, M. Lababidi, and C. Otto, "Bridging the Gap Between Computational Photography and Visual Recognition," IEEE Transactions on Pattern Analysis and Machine Intelligence, pp. 1-1, 2020. [URL]
D. Dunning, N. Morgan, J. Moore, E. Nelluvelil, T. Taffola, and R. Robey, "MATAR: A Performance Portability and Productivity Implementation of Data-Oriented Design with Kokkos," LA-UR-20-27630, 2020.
B. Moore, S. Montgomery, M. Niethammer, H. Greer, and S. Aylward, "Automatic Optic Nerve Sheath Measurement in Point-of-Care Ultrasound," in Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis. Springer International Publishing, 2020, pp. 23-32. [URL]
J. Bianchi, B. Paniagua, A. De Oliveira Ruellas, J. Fillion-Robin, J. Prietro, J. Gonçalves, J. Hoctor, M. Yatabe, M. Styner, T. Li, M. Gurgel, C. Chaves Junior, C. Massaro, D. Garib, L. Vilanova, J. Henriques, A. Castillo, G. Janson, L. Iwasaki, J. Nickel, K. Evangelista, and L. Cevidanes, "3D Slicer Craniomaxillofacial Modules Support Patient-Specific Decision-Making for Personalized Healthcare in Dental Research," in Multimodal Learning for Clinical Decision Support and Clinical Image-Based Procedures. Springer International Publishing, 2020, pp. 44-53. [URL]
S. Pizer, J. Hong, J. Vicory, Z. Liu, J. Marron, H. Choi, J. Damon, S. Jung, B. Paniagua, J. Schulz, A. Sharma, L. Tu, and J. Wang, "Object shape representation via skeletal models (s-reps) and statistical analysis," in Riemannian Geometric Statistics in Medical Image Analysis. Elsevier, 2020, pp. 233-271. [URL]
M. Dumont, J. Prieto, S. Brosset, L. Cevidanes, J. Bianchi, A. Ruellas, M. Gurgel, C. Massaro, A. Del Castillo, M. Ioshida, M. Yatabe, E. Benavides, H. Rios, F. Soki, G. Neiva, J. Aristizabal, D. Rey, M. Alvarez, K. Najarian, J. Gryak, M. Styner, J. Fillion-Robin, B. Paniagua, and R. Soroushmehr, "Patient Specific Classification of Dental Root Canal and Crown Shape," in Shape in Medical Imaging. Springer International Publishing, 2020, pp. 145-153. [URL]
J. Webb, A. Bray, and R. Clipp, "Parameterization of Respiratory Physiology and Pathophysiology for Real-Time Simulation," in 42nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC'20), 2020.
L. Zhang, C. Long, X. Zhang, and C. Xiao, "RIS-GAN: Explore Residual and Illumination with Generative Adversarial Networks for Shadow Removal," in AAAI Conference on Artificial Intelligence (AAAI), 2020.
J. Scott, B. Ravichandran, C. Funk, R. Collins, and Y. Liu, "From Image to Stability: Learning Dynamics from Human Pose," in European Conference on Computer Vision 2020, 2020.
B. Vasu and C. Long, "Iterative and Adaptive Sampling with Spatial Attention for Black-Box Model Explanations," in IEEE Winter Conference on Applications of Computer Vision (WACV), 2020. [URL]
R. Clipp, A. Bray, and J. Webb, "An Integrated Model for Hemorrhagic Shock and Fluid Resuscitation," in Military Health System Research Symposium (MHSRS), 2020.
A. Hoogs, M. Dawkins, B. Richards, G. Cutter, D. Hart, and M. Clarke, "An Open-Source System for Do-It-Yourself AI in the Marine Environment," in Ocean Sciences Meeting 2020, 2020.
A. Islam, C. Long, A. Basharat, and A. Hoogs, "Dual-Order Attentive Generative Adversarial Network for Image Copy-Move Forgery Detection and Localization," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2020.
H. Weideman, C. Stewart, J. Parham, J. Holmberg, K. Flynn, J. Calambokidis, D. Paul, A. Bedetti, M. Henley, F. Pope, and J. Lepirei, "Extracting identifying contours for African elephants and humpback whales using a learned appearance model," in Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision (WACV), 2020. [URL]
M. Amgad, H. Elfandy, H. Hussein, L. Atteya, M. Elsebaie, L. Abo Elnasr, R. Sakr, H. Salem, A. Ismail, A. Saad, J. Ahmed, M. Elsebaie, M. Rahman, I. Ruhban, N. Elgazar, Y. Alagha, M. Osman, A. Alhusseiny, M. Khalaf, A. Younes, A. Abdulkarim, D. Younes, A. Gadallah, A. Elkashash, S. Fala, B. Zaki, J. Beezley, D. Chittajallu, D. Manthey, D. Gutman, and L. Cooper, "Structured crowdsourcing enables convolutional segmentation of histology images," Bioinformatics, vol. 35, no. 18, pp. 3461-3467, Sep. 2019. [URL]
J. Bianchi, J. Gonçalves, A. Ruellas, J. Vimort, M. Yatabe, B. Paniagua, P. Hernandez, E. Benavides, F. Soki, and L. Cevidanes, "Software comparison to analyze bone radiomics from high resolution CBCT scans of mandibular condyles," Dentomaxillofacial Radiology, vol. 48, no. 6, pp. 20190049, Sep. 2019. [URL]
B. Shoukri, J. Prieto, A. Ruellas, M. Yatabe, J. Sugai, M. Styner, H. Zhu, C. Huang, B. Paniagua, S. Aronovich, L. Ashman, E. Benavides, P. de Dumast, N. Ribera, C. Mirabel, L. Michoud, Z. Allohaibi, M. Ioshida, L. Bittencourt, L. Fattori, L. Gomes, and L. Cevidanes, "Minimally Invasive Approach for Diagnosing TMJ Osteoarthritis," Journal of Dental Research, vol. 98, no. 10, pp. 1103-1111, Sep. 2019. [URL]
B. Vasu, J. Barnett, R. Collins, and A. Hoogs, "Explainability for Content-Based Image Retrieval," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2019.
T. Buchacker, C. Mühlfeld, C. Wrede, W. Wagner, R. Beare, M. McCormick, and R. Grothausmann, "Assessment of the Alveolar Capillary Network in the Postnatal Mouse Lung in 3D Using Serial Block-Face Scanning Electron Microscopy," Frontiers in Physiology, vol. 10, pp. 1357, Nov. 2019. [URL]
M. Yatabe, J. Prieto, M. Styner, H. Zhu, A. Ruellas, B. Paniagua, F. Budin, E. Benavides, B. Shoukri, L. Michoud, N. Ribera, and L. Cevidanes, "3D superimposition of craniofacial imaging—The utility of multicentre collaborations," Orthodontics & Craniofacial Research, vol. 22, no. S1, pp. 213-220, May 2019. [URL]
A. Chaudhary, S. Jhaveri, A. Sanchez, L. Avila, K. Martin, A. Vacanti, M. Hanwell, and W. Schroeder, "Cross-Platform Ubiquitous Volume Rendering Using Programmable Shaders in VTK for Scientific and Medical Visualization," IEEE Computer Graphics and Applications, vol. 39, no. 1, pp. 26-43, Mar. 2019.
A. Bray, J. Webb, A. Enquobahrie, J. Vicory, J. Heneghan, R. Hubal, S. TerMaath, P. Asare, and R. Clipp, "Pulse Physiology Engine: an Open-Source Software Platform for Computational Modeling of Human Medical Simulation," SN Comprehensive Clinical Medicine, Mar. 2019. [URL]
R. Clipp, J. Webb, R. Metoyer, and A. Bray, "Simulation of Asthma Attack and Inhaler Actuation using the Pulse Physiology Engine," in BMES Frontiers in Medical Devices, 2019. [URL]
M. Ioshida, J. Prieto, C. Huang, A. Ruellas, M. Yatabe, M. Styner, L. Cevidanes, L. Michoud, B. Paniagua, J. Bianchi, and J. Gonçalves, "A web-based system for statistical shape analysis in temporomandibular joint osteoarthritis," in Medical Imaging 2019: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2019. [URL]
B. Paniagua, J. Prothero, J. Vimort, A. Ruellas, J. Marron, L. Cevidanes, E. Benavides, M. McCormick, and P. Hernandez-Cerdan, "Advanced statistical analysis to classify high dimensionality textural probability-distribution matrices," in Medical Imaging 2019: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2019. [URL]
L. Tu, G. Rogers, M. Linguraru, A. Porras, A. Oh, N. Lepore, G. Buck, D. Tsering, A. Enquobahrie, and R. Keating, "Quantitative evaluation of local head malformations from 3 dimensional photography: application to craniosynostosis," in Medical Imaging 2019: Computer-Aided Diagnosis, 2019. [URL]
S. Horvath, V. Arikatla, K. Cleary, K. Sharma, A. Rosenberg, and A. Enquobahrie, "Towards an advanced virtual ultrasound-guided renal biopsy trainer," in Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling, 2019. [URL]
J. Zupnik, M. Ioshida, M. Yatabe, A. Ruellas, L. Gomes, S. Aronovich, E. Benavides, S. Edwards, B. Paniagua, and L. Cevidanes, "Three-dimensional analysis of condylar changes in surgical correction for open bite patients with skeletal class II and class III malocclusions," International Journal of Oral and Maxillofacial Surgery, vol. 48, no. 6, pp. 739-745, Jun. 2019. [URL]
B. Vasu and A. Savakis, "Visualizing the Resilience of Deep Convolutional Network Interpretations.," in IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops, 2019.
B. Dong, R. Collins, and A. Hoogs, "Explainability for Content-Based Image Retrieval," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshop on Explainable Artificial Intelligence (AI), 2019.
A. Lasso, J. Fillion-Robin, G. Fichtinger, M. Asselin, C. Pinter, K. Martin, and J. Vimort, "SlicerVR for image-guided therapy planning in immersive virtual reality," in The Hamlyn Symposium on Medical Robotics, 2019. [URL]
P. Yushkevich, A. Pashchinskiy, I. Oguz, S. Mohan, J. Schmitt, J. Stein, D. Zukić, J. Vicory, M. McCormick, N. Yushkevich, N. Schwartz, Y. Gao, and G. Gerig, "User-Guided Segmentation of Multi-modality Medical Imaging Datasets with ITK-SNAP," Neuroinformatics, vol. 17, no. 1, pp. 83-102, Jan. 2019. [URL]
O. Ruebel, A. Tritt, B. Dichter, T. Braun, N. Cain, N. Clack, T. Davidson, M. Dougherty, J. Fillion-Robin, N. Graddis, M. Grauer, J. Kiggins, L. Niu, D. Ozturk, W. Schroeder, I. Soltesz, F. Sommer, K. Svoboda, L. Ng, L. Frank, and K. Bouchard, "NWB:N 2.0: An Accessible Data Standard for Neurophysiology," Neuroscience, Jan. 2019. [URL]
M. Brown, K. Fieldhouse, E. Swears, P. Tunison, A. Romlein, and A. Hoogs, "Multi-Modal Detection Fusion on a Mobile UGV for Wide-Area, Long-Range Surveillance," in 2019 IEEE Winter Conference on Applications of Computer Vision (WACV), 2019. [URL]
A. Enquobahrie, S. Horvath, S. Arikatla, A. Rosenberg, K. Cleary, and K. Sharma, "Development and face validation of ultrasound-guided renal biopsy virtual trainer," Healthcare Technology Letters, vol. 6, no. 6, pp. 210-213, Dec. 2019. Winner, Outstanding Paper Award. [URL]
R. Zhang, D. Zukić, D. Byrd, A. Enquobahrie, A. Alessio, K. Cleary, F. Banovac, and P. Kinahan, "PET/CT-guided biopsy with respiratory motion correction," International Journal of Computer Assisted Radiology and Surgery, vol. 14, no. 12, pp. 2187-2198, Dec. 2019. [URL]
A. Porras, L. Tu, D. Tsering, E. Mantilla, A. Oh, A. Enquobahrie, R. Keating, G. Rogers, and M. Linguraru, "Quantification of Head Shape from Three-Dimensional Photography for Presurgical and Postsurgical Evaluation of Craniosynostosis:," Plastic and Reconstructive Surgery, vol. 144, no. 6, pp. 1051e-1060e, Dec. 2019. [URL]
C. Gueunet, P. Fortin, J. Jomier, and J. Tierny, "Task-Based Augmented Contour Trees with Fibonacci Heaps," IEEE Transactions on Parallel and Distributed Systems, vol. 30, no. 8, pp. 1889-1905, Aug. 2019. [URL]
D. Chittajallu, B. Dong, P. Tunison, R. Collins, K. Wells, J. Fleshman, G. Sankaranarayanan, S. Schwaitzberg, L. Cavuoto, and A. Enquobahrie, "XAI-CBIR: Explainable AI System for Content based Retrieval of Video Frames from Minimally Invasive Surgery Videos," in 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), 2019. [URL]
T. Czernuszewicz, V. Papadopoulou, J. Rojas, R. Rajamahendiran, J. Perdomo, J. Butler, M. Herlacher, G. O'Connell, D. Zukić, S. Aylward, P. Dayton, and R. Gessner, "A preclinical ultrasound platform for widefield 3D imaging of rodent tumors," in American Association for Cancer Research Annual Meeting, 2019.
M. Horstemeyer, P. Berthelson, J. Moore, A. Persons, A. Dobbins, and R. Prabhu, "A mechanical brain damage framework used to model abnormal brain tau protein accumulations of National Football League players," Annals of biomedical engineering, vol. 47, no. 9, pp. 1873–1888, 2019.
J. Wei, C. Long, H. Zou, and C. Xiao, "Shadow Inpainting and Removal Using Generative Adversarial Networks with Slice Convolutions," Computer Graphics Forum (CGF), vol. 38, no. 7, pp. 381–392, 2019.
M. Tian, H. Guo, H. Chen, Q. Wang, C. Long, and Y. Ma, "Automated Pig Counting Using Deep Learning," Computers and Electroics in Agriculutre, vol. 16, pp. 1–10, 2019.
D. Sharma, Z. Shanis, C. Reddy, S. Gerber, and A. Enquobahrie, "Active Learning Technique for Multimodal Brain Tumor Segmentation Using Limited Labeled Images," in Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data. Springer International Publishing, 2019, pp. 148-156. [URL]
Z. Shanis, S. Gerber, M. Gao, and A. Enquobahrie, "Intramodality Domain Adaptation Using Self Ensembling and Adversarial Training," in Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data. Springer International Publishing, 2019, pp. 28-36. [URL]
C. Gueunet, P. Fortin, J. Jomier, and J. Tierny, "Task-based Augmented Reeb Graphs with Dynamic ST-Trees," Eurographics Symposium on Parallel Graphics and Visualization, pp. 11 pages, 2019. [URL]
M. Hosseini and M. Kirchner, "Unsupervised Image Manipulation Localization With Non-Binary Label Attribution," IEEE Signal Processing Letters, vol. 26, no. 7, pp. 976–980, 2019. [URL]
M. Yatabe, L. Gomes, A. Ruellas, J. Lopinto, L. Macron, B. Paniagua, F. Budin, J. Prieto, M. Ioshida, and L. Cevidanes, "Challenges in measuring angles between craniofacial structures," Journal of Applied Oral Science, vol. 27, pp. e20180380, 2019. [URL]
B. Richards, O. Beijbom, M. Campbell, M. Clarke, G. Cutter, M. Dawkins, D. Edington, D. Hart, M. Hill, A. Hoogs, D. Kriegman, E. Moreland, T. Oliver, W. Michaels, M. Placentino, A. Rollo, C. Thompson, F. Wallace, I. Williams, and K. Williams, "Automated Analysis of Underwater Imagery: Accomplishments, Products, and Vision," NOAA technical memorandum NMFS PIFSC, 2019. [URL]
J. Moore, N. Morgan, M. Rodgers, R. Lebensohn, M. Zecevic, and V. Chiravalle, "Elements: High Order Serendipity Space Finite Element Library," Poster presented at MultiMat 2019, Trento, Italy, 2019.
J. Moore, N. Morgan, and M. Horstemeyer, "ELEMENTS: A high-order finite element library in C++," SoftwareX, vol. 10, pp. 100257, 2019.
C. Liu and M. Kirchner, "CNN-based Rescaling Factor Estimation," in ACM Workshop on Information Hiding and Multimedia Security, 2019. [URL]
E. Quiring, M. Kirchner, and K. Rieck, "On the Security and Applicability of Fragile Camera Fingerprints," in European Symposium on Research in Computer Security, 2019. [URL]
M. Kirchner, C. Pasquini, and I. Shumailov, "Information Security Meets Adversarial Examples," in IEEE International Workshop on Information Forensics and Security (WIFS), 2019. [URL]
M. Kirchner and C. Johnson, "SPN-CNN: Boosting Sensor-Based Source Camera Attribution With Deep Learning," in IEEE International Workshop on Information Forensics and Security (WIFS), 2019. Winner, Best Paper Award. [URL]
C. Funk, J. Crall, W. Hicks, C. Law, P. Tunison, R. Blue, A. Hoogs, T. Rovito, and A. Maltenfort, "WEFT Feature Detection and Mensuration for Airplane Classification in Satellite Imagery," in MSS National Symposium on Sensor and Data Fusion, 2019.
D. Chittajallu, A. Basharat, P. Tunison, S. Horvath, K. Wells, S. Leeds, J. Fleshman, G. Sankaranarayanan, and A. Enquobahrie, "Content-based retrieval of video segments from minimally invasive surgery videos using deep convolutional video descriptors and iterative query refinement," in Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling, 2019.
C. Long, A. Basharat, and A. and Hoogs, "A Coarse-to-fine Deep Convolutional Neural Network Framework for Frame Duplication Detection and Localization in Forged Videos," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshops (CVPRW), 2019.
B. Ding, C. Long, L. Zhang, and C. Xiao, "ARGAN: Attentive Recurrent Generative Adversarial Network for Shadow Detection and Removal," in Proceedings of the IEEE International Conference on Computer Vision (ICCV), 2019.
C. Long, R. Collins, E. Swears, and A. Hoogs, "Deep Neural Networks In Fully Connected CRF For Image Labeling With Social Network Metadata," in Proceedings of the IEEE Winter Conference on Applications of Computer Vision (WACV), 2019.
M. Leotta, J. Shan, X. Zhang, C. Long, B. Xu, M. Purri, M. Zins, B. Jacquet, K. Dana, S. Seida, M. Berlin, Z. Li, J. Xue, and D. Lipsa, "Danesfield: Integrating Deep Learning and Classical Methods for Multiview Semantic 3D Modeling," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2019.
M. Leotta, C. Long, B. Jacquet, M. Zins, D. Lipsa, J. Shan, B. Xu, Z. Li, X. Zhang, S. Chang, M. Purri, J. Xue, and K. Dana, "Urban Semantic 3D Reconstruction From Multiview Satellite Imagery," in The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops: EarthVision, 2019. Winner, Best Paper Award. [URL]
T. Hu, C. Long, L. Zhang, and C. Xiao, "VITAL: A Visual Interpretation on Text with Adversarial Learning for Image Labeling," in arXiv preprint arXiv:1907.11811, 2019.
J. Prothero, J. Vimort, A. Ruellas, J. Marron, H. Shah, L. Cevidanes, E. Benavides, and B. Paniagua, "Advanced statistical analysis to classify high dimensionality textural probability-distribution matrices," in submitted to Society of Photographic Instrumentation Engineers (SPIE) in Medical Imaging Conference 2019, 2019.
P. Hernandez-Cerdan, B. Paniagua, J. Prothero, J. Marron, E. Livingston, T. Bateman, and M. McCormick, "Methods for quantitative characterization of bone injury from computed-tomography images," in submitted to Society of Photographic Instrumentation Engineers (SPIE) in Medical Imaging Conference 2019, 2019.
A. AlHadidi, B. Paniagua, R. Cook, D. Tyndall, Z. Baqain, and L. Cevidanes, "The use of a custom-made virtual template for corrective surgeries of asymmetric patients: proof of principle and a multi-center end-user survey," International Journal of Computer Assisted Radiology and Surgery, Sep. 2018. [URL]
D. Zukić, D. Byrd, P. Kinahan, and A. Enquobahrie, "Calibration Software for Quantitative PET/CT Imaging Using Pocket Phantoms," Tomography: A Journal for Imaging Research, vol. 4, no. 3, pp. 148-158, Sep. 2018. [URL]
V. Arikatla, S. Horvath, Y. Fu, L. Cavuoto, S. De, S. Schwaitzberg, and A. Enquobahrie, "Development and face validation of a virtual camera navigation task trainer," Surgical Endoscopy, Oct. 2018. [URL]
Y. Fu, L. Cavuoto, D. Qi, K. Panneerselvam, G. Yang, V. Artikala, A. Enquobahrie, S. De, and S. Schwaitzberg, "Validation of a virtual intracorporeal suturing simulator," Surgical Endoscopy, Oct. 2018. [URL]
F. Rahman, B. Vasu, and A. Savakis, "Resilience and Self-Healing of Deep Convolutional Object Detectors," in 2018 25th IEEE International Conference on Image Processing (ICIP), 2018. [URL]
D. CodyMorris, D. Chan, M. Palmeri, T. Glass, M. McCormick, K. JackTay, T. Polascik, R. Gupta, and K. Nightingale, "Correlation Between 3D ARFI and Quantitative Imaging Metrics from SWEI and Multi-Parametric MRI in Vivo in Normal and Cancerous Prostate Tissue," in 2018 IEEE International Ultrasonics Symposium (IUS), 2018. [URL]
R. Collins, K. Osterdahl, A. Shringi, K. Corona, R. Meth, and A. Hoogs, "Data, Algorithms, and Framework for Automated Analytics of Surveillance Camera Networks," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2018. [URL]
C. Law, R. Blue, D. Stoup, P. Tunison, A. Hoogs, B. Vasu, J. Van Cor, J. Kerekes, A. Savakis, T. Rovito, C. Stansifer, and S. Thomas, "Deep Learning for Object Detection and Classification in Satellite Imagery," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2018.
J. Crall, J. Becker, P. Tunison, M. Dawkins, A. Basharat, R. Blue, M. Turek, and A. Hoogs, "Deep Learning for Small Object Detection in Satellite Infrared Imagery," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2018.
M. Brown, K. Fieldhouse, E. Swears, P. Tunison, A. Romlein, and A. Hoogs, "Multi-Modal Detection Fusion on Mobile UGV for Squad-Level Threat Alerting," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2018.
A. Basharat, P. Tunison, and A. Hoogs, "Rapid Learning of Maritime Scenes Through Query Refinement," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2018.
M. Phillips, R. Blue, M. Turek, A. Hoogs, and T. Rovito, "Satellite Image Patch Classification Using Deep Neural Networks," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2018.
C. Funk, S. Nagendra, J. Scott, B. Ravichandran, J. Challis, R. Collins, and Y. Liu, "Learning Dynamics from Kinematics: Estimating 2D Foot Pressure Maps from Video Frames," arXiv preprint arXiv:1811.12607, Nov. 2018. [URL]
F. Rahman, B. Vasu, J. Cor, J. Kerekes, and A. Savakis, "Siamese Network with Multi-Level Features for Patch-Based Change Detection in Satellite Imagery," in 2018 IEEE Global Conference on Signal and Information Processing (GlobalSIP), 2018. [URL]
G. Hua, C. Long, M. Yang, and Y. Gao, "Collaborative Active Visual Recognition from Crowds: A Distributed Ensemble Approach," IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 40, no. 3, pp. 582-594, Mar. 2018. [URL]
B. Paniagua, H. Shah, P. Hernandez-Cerdan, F. Budin, D. Chittajallu, R. Walter, A. Mol, A. Khan, and J. Vimort, "Automatic quantification framework to detect cracks in teeth," in Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018. [URL]
J. Prothero, M. McCormick, B. Paniagua, J. Vimort, A. Ruellas, J. Marron, L. Cevidanes, and E. Benavides, "Detection of bone loss via subchondral bone analysis," in Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018. [URL]
J. Prieto, P. de Dumast, C. Mirabel, B. Paniagua, L. Cevidanes, N. Tubau, M. Styner, A. Ruellas, and M. Yatabe, "SVA: shape variation analyzer," in Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018. [URL]
I. Lyu, J. Perdomo, G. Yapuncich, B. Paniagua, D. Boyer, and M. Styner, "Group-wise shape correspondence of variable and complex objects," in Medical Imaging 2018: Image Processing, 2018. [URL]
V. Arikatla, M. Tyagi, A. Enquobahrie, T. Nguyen, G. Blakey, R. White, and B. Paniagua, "High fidelity virtual reality orthognathic surgery simulator," in SPIE Medical Imaging, 2018. [URL]
S. Horvath, B. Paniagua, J. Andruejol, A. Porras, M. Linguraru, and A. Enquobahrie, "Osteotomy planner: an open-source tool for osteotomy simulation," in SPIE Medical Imaging, 2018. [URL]
B. Vasu, F. Rahman, and A. Savakis, "Aerial-CAM: Salient Structures and Textures in Network Class Activation Maps of Aerial Imagery," in 2018 IEEE 13th Image, Video, and Multidimensional Signal Processing Workshop (IVMSP), 2018. [URL]
P. de Dumast, C. Mirabel, L. Cevidanes, A. Ruellas, M. Yatabe, M. Ioshida, N. Ribera, L. Michoud, L. Gomes, C. Huang, H. Zhu, L. Muniz, B. Shoukri, B. Paniagua, M. Styner, S. Pieper, F. Budin, J. Vimort, L. Pascal, and J. Prieto, "A web-based system for neural network based classification in temporomandibular joint osteoarthritis," Computerized Medical Imaging and Graphics, vol. 67, pp. 45-54, Jul. 2018. [URL]
A. Porras, B. Paniagua, S. Ensel, R. Keating, G. Rogers, A. Enquobahrie, and M. Linguraru, "Locally Affine Diffeomorphic Surface Registration and Its Application to Surgical Planning of Fronto-Orbital Advancement," IEEE Transactions on Medical Imaging, vol. 37, no. 7, pp. 1690-1700, Jul. 2018. [URL]
S. Sorokan, A. Jefferies, and S. Miller, "L’imagerie du cerveau du nouveau-né à terme," Paediatrics & Child Health, vol. 23, no. 5, pp. 329-335, Jul. 2018. [URL]
J. Fillion-Robin, M. McCormick, O. Padron, M. Smolens, M. Grauer, and M. Sarahan, "jcfr/scipy_2018_scikit-build_talk: SciPy 2018 Talk | scikit-build: A Build System Generator for CPython C/C++/Fortran/Cython Extensions," presented at SciPy 2018, 2018. [URL]
R. Clipp, J. Vicory, S. Horvath, S. Mitran, J. Kimbell, J. Rhee, and A. Enquobahrie, "An Interactive, Patient-Specific Virtual Surgical Planning System for Upper Airway Obstruction Treatments," in Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018. [URL]
B. Levin, Y. Jiang, E. Padgett, S. Waldon, C. Quammen, C. Harris, U. Ayachit, M. Hanwell, P. Ercius, D. Muller, and R. Hovden, "Tutorial on the Visualization of Volumetric Data Using tomviz," Microscopy Today, vol. 26, no. 1, pp. 12-17, Jan. 2018. [URL]
Y. Han, E. Oakley, G. Shafirstein, Y. Rabin, and L. Kara, "Reconstruction of a Deformed Tumor Based on Fiducial Marker Registration: A Computational Feasibility Study," Technology in Cancer Research & Treatment, vol. 17, pp. 153303461876679, Jan. 2018. [URL]
A. Oh, M. Mastromanolis, B. Paniagua, A. Enquobahrie, M. Linguraru, L. Tu, A. Porras, N. Lepore, D. Tsering, R. Keating, and G. Rogers, "Radiation-free quantification of head malformations in craniosynostosis patients from 3D photography," in Medical Imaging 2018: Computer-Aided Diagnosis, 2018. [URL]
L. Gomes, L. Soares Cevidanes, M. Gomes, A. Carlos de Oliveira Ruellas, D. Obelenis Ryan, B. Paniagua, L. Wolford, and J. Gonçalves, "Three-dimensional quantitative assessment of surgical stability and condylar displacement changes after counterclockwise maxillomandibular advancement surgery: Effect of simultaneous articular disc repositioning," American Journal of Orthodontics and Dentofacial Orthopedics, vol. 154, no. 2, pp. 221-233, Aug. 2018. [URL]
A. Lasso, H. Nam, P. Dinh, C. Pinter, J. Fillion-Robin, S. Pieper, S. Jhaveri, J. Vimort, K. Martin, M. Asselin, F. McGowan, R. Kikinis, G. Fichtinger, and M. Jolley, "Interaction with Volume-Rendered Three-Dimensional Echocardiographic Images in Virtual Reality," Journal of the American Society of Echocardiography, Aug. 2018. [URL]
J. Fishbaugh, L. Pascal, L. Fischer, T. Nguyen, C. Boen, J. Goncalves, G. Gerig, and B. Paniagua, "Estimating shape correspondence for populations of objects with complex topology," in 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018), 2018. [URL]
H. Greer, S. Gerber, M. Niethammer, R. Kwitt, M. McCormick, D. Chittajallu, N. Siekierski, M. Oetgen, K. Cleary, and S. Aylward, "Scoliosis screening and monitoring using self contained ultrasound and neural networks," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2018. [URL]
D. Chittajallu, N. Siekierski, S. Lee, S. Gerber, J. Beezley, D. Manthey, D. Gutman, and L. Cooper, "Vectorized persistent homology representations for characterizing glandular architecture in histology images," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2018. [URL]
M. Kim, J. Kress, J. Choi, N. Podhorszki, S. Klasky, M. Wolf, K. Mehta, K. Huck, B. Geveci, S. Phillip, R. Maynard, H. Guo, T. Peterka, K. Moreland, C. Chang, J. Dominski, M. Churchill, and D. Pugmire, "In Situ Analysis and Visualization of Fusion Simulations: Lessons Learned," in High Performance Computing. Springer International Publishing, 2018, pp. 230-242. [URL]
D. Chittajallu, M. McCormick, S. Gerber, T. Czernuszewicz, R. Gessner, M. Willis, M. Niethammer, R. Kwitt, and S. Aylward, "Image-based methods for phase estimation, gating and temporal super-resolution of cardiac ultrasound," IEEE Transactions on Biomedical Engineering, pp. 1-1, 2018. [URL]
S. Gerber, M. Niethammer, M. Styner, and S. Aylward, "Exploratory Population Analysis with Unbalanced Optimal Transport," in Medical Image Computing and Computer Assisted Intervention – MICCAI 2018. Springer International Publishing, 2018, pp. 464-472. [URL]
J. Moore, N. Morgan, M. Rodgers, R. Lebensohn, and V. Chiravalle, "High Order Serendipity Space Finite Element Library for Massively Parallel VPSC Simulations," Poster presented at the Los Alamos National Labs student symposium, Los Alamos, New Mexico, 2018.
T. Czernuszewicz, V. Papadopoulou, J. Rojas, R. Rajamahendiran, J. Perdomo, J. Butler, M. Harlacher, G. O’Connell, D. Zukić, S. Aylward, P. Dayton, and R. Gessner, "A new preclinical ultrasound platform for widefield 3D imaging of rodents," Review of Scientific Instruments, vol. 89, no. 7, pp. 075107, 2018. [URL]
J. Vicory, L. Pascal, P. Hernandez, J. Fishbaugh, J. Prieto, M. Mostapha, C. Huang, H. Shah, J. Hong, Z. Liu, L. Michoud, J. Fillion-Robin, G. Gerig, H. Zhu, S. Pizer, M. Styner, and B. Paniagua, "SlicerSALT: Shape AnaLysis Toolbox," in Shape in Medical Imaging. Springer International Publishing, 2018, pp. 65-72. [URL]
J. Vicory, E. Murphy, and R. Halter, "Creation and Visualization of High-quality Tetrahedral Meshes from Segmentations using 3D Slicer," in 19th International Conference on Biomedical Applications of Electrical Impedance Tomography, 2018. [URL]
T. Nguyen, B. Paniagua, L. Pascal, J. Fishbaugh, C. Boen, J. Goncalves, L. Fischer, and T. Jackson, "A New Method for Quantifying Craniofacial Shape Changes," in 2018 IADR/PER General Session (London, England), 2018. [URL]
M. Goljan, J. Fridrich, and M. Kirchner, "Image Manipulation Detection Using Sensor Linear Pattern," in IS&T Electronic Imaging: Media Watermarking, Security, and Forensics, 2018. [URL]
F. Gessa, P. Asare, A. Bray, R. Clipp, and M. Poler, "Towards A Test and Validation Framework for Closed-Loop Physiology Management Systems for Critical and Perioperative Care," in Medical Cyber Physical Systems Workshop, 2018.
M. Fan, J. Vicory, S. McGill, S. Pizer, and J. Rosenman, "Features for the Detection of Flat Polyps in Colonoscopy Video," in Medical Image Understanding and Analysis, 2018. [URL]
C. McDaniel, N. Dunlop, R. White, Jr, G. Blakey, T. Nguyen, and B. Paniagua, "High fidelity virtual reality orthognathic surgery simulator," in Proceedings of the Annual Conference of the American College of Oral and Maxillofacial Surgeons, 2018.
D. Pugmire, A. Yenpure, M. Kim, J. Kress, R. Maynard, H. Childs, and B. Hentschel, "Performance-Portable Particle Advection with VTK-m," in Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization, 2018. [URL]
Y. Ma, H. Guo, H. Chen, M. Tian, X. Huo, C. Long, S. Tang, X. Song, and Q. Wang, "A Method to Build Multi-Scene Datasets for CNN for Camera Pose Regression," in Proceedings of the IEEE International Conference on Artificial Intelligence and Virtual Reality (AIVR), 2018.
M. Leotta, E. Smith, and D. Russell, "TeleSculptor: Dense 3D Models from Uncalibrated FMV," in Proceedings of the MSS National Symposium on Passive Sensors, 2018.
V. Arikatla, T. Nguyen, G. Blakey, R. White, Jr, A. Enquobahrie, and B. Paniagua, "Virtual reality osteotomy trainer for orthognathic surgery," in Submitted to 10th National Image-Guided Therapy Workshop, 2018.
A. Hasan, E. Kolahdouz, A. Enquobahrie, T. Caranasos, J. Vavalle, and B. Griffith, "Image-based immersed boundary model of the aortic root," Medical Engineering & Physics, vol. 47, pp. 72-84, Sep. 2017. [URL]
Z. Sun and A. Hoogs, "Compact image representation by binary component analysis," in Proceedings of the IEEE International Conference on Image Processing, 2017. [URL]
E. Wengrowski, Z. Sun, and A. Hoogs, "Reflection correspondence for exposing photograph manipulation," in Proceedings of the IEEE International Conference on Image Processing, 2017. [URL]
S. Dangi, H. Shah, A. Porras, B. Paniagua, C. Linte, M. Linguraru, and A. Enquobahrie, "Robust head CT image registration pipeline for craniosynostosis skull correction surgery," Healthcare Technology Letters, vol. 4, no. 5, pp. 174-178, Oct. 2017. [URL]
C. Herz, J. Fillion-Robin, M. Onken, J. Riesmeier, A. Lasso, C. Pinter, G. Fichtinger, S. Pieper, D. Clunie, R. Kikinis, and A. Fedorov, "dcmqi : An Open Source Library for Standardized Communication of Quantitative Image Analysis Results Using DICOM," Cancer Research, vol. 77, no. 21, pp. e87-e90, Nov. 2017. [URL]
J. van Griethuysen, A. Fedorov, C. Parmar, A. Hosny, N. Aucoin, V. Narayan, R. Beets-Tan, J. Fillion-Robin, S. Pieper, and H. Aerts, "Computational Radiomics System to Decode the Radiographic Phenotype," Cancer Research, vol. 77, no. 21, pp. e104-e107, Nov. 2017. [URL]
D. Gutman, M. Khalilia, S. Lee, M. Nalisnik, Z. Mullen, J. Beezley, D. Chittajallu, D. Manthey, and L. Cooper, "The Digital Slide Archive: A Software Platform for Management, Integration, and Analysis of Histology for Cancer Research," Cancer Research, vol. 77, no. 21, pp. e75-e78, Nov. 2017. [URL]
J. Jomier, "Open science – towards reproducible research," Information Services & Use, vol. 37, no. 3, pp. 361-367, Nov. 2017. [URL]
D. Qi, K. Panneerselvam, W. Ahn, V. Arikatla, A. Enquobahrie, and S. De, "Virtual interactive suturing for the Fundamentals of Laparoscopic Surgery (FLS)," Journal of Biomedical Informatics, vol. 75, pp. 48-62, Nov. 2017. [URL]
R. Vetreno, R. Yaxley, B. Paniagua, G. Johnson, and F. Crews, "Adult rat cortical thickness changes across age and following adolescent intermittent ethanol treatment," Addiction Biology, vol. 22, no. 3, pp. 712-723, May 2017. [URL]
S. Han, A. Fafard, J. Kerekes, M. Gartley, E. Ientilucci, A. Savakis, C. Law, J. Parhan, M. Turek, K. Fieldhouse, and T. Rovito, "Efficient generation of image chips for training deep learning algorithms," in SPIE Defense + Security, 2017. [URL]
Y. Nie, X. Cao, C. Long, P. Li, and G. Li, "L2GSCI: Local to Global Seam Cutting and Integrating for Accurate Face Contour Extraction," arxiv, Mar. 2017. [URL]
A. Porras, D. Zukić, A. Enquobahrie, R. Keating, G. Rogers, and M. Linguraru, "Personalized Optimal Planning of Fronto-Orbital Advancement Surgery for the Correction of Metopic Craniosynostosis from CT," in American Cleft Palate-Craniofacial Association's Annual Meeting, 2017.
M. Dawkins, L. Sherrill, K. Fieldhouse, A. Hoogs, B. Richards, D. Zhang, L. Prasad, K. Williams, N. Lauffenburger, and G. Wang, "An open-source platform for underwater image and video analytics," in Proceedings of the IEEE Winter Conference on Applications of Computer Vision, 2017. Winner, Best Paper Honorable Mention. [URL]
B. Paniagua, S. Kim, M. Moustapha, M. Styner, H. Cody-Hazlett, R. Gimple-Smith, A. Rumple, J. Piven, J. Gilmore, G. Skolnick, and K. Patel, "Brain structure in sagittal craniosynostosis," in SPIE Medical Imaging, 2017. [URL]
B. Paniagua, L. Pascal, J. Prieto, J. Vimort, L. Gomes, M. Yatabe, A. Ruellas, F. Budin, S. Pieper, M. Styner, E. Benavides, and L. Cevidanes, "Diagnostic index: an open-source tool to classify TMJ OA condyles," in SPIE Medical Imaging, 2017. [URL]
J. Prieto, B. Paniagua, M. Yatabe, A. Ruellas, L. Fattori, L. Muniz, M. Styner, and L. Cevidanes, "Federating heterogeneous datasets to enhance data sharing and experiment reproducibility," in SPIE Medical Imaging, 2017. [URL]
L. Potter, S. Arikatla, A. Bray, J. Webb, and A. Enquobahrie, "Physiology informed virtual surgical planning: a case study with a virtual airway surgical planner and BioGears," in SPIE Medical Imaging, 2017. [URL]
P. Tabrizi, H. Sang, H. Talari, D. Preciado, R. Monfaredi, B. Reilly, S. Arikatla, A. Enquobahrie, and K. Cleary, "Temporal bone dissection simulator for training pediatric otolaryngology surgeons," in SPIE Medical Imaging, 2017. [URL]
C. Ahlbrecht, A. Ruellas, B. Paniagua, J. Schilling, J. McNamara, and L. Cevidanes, "Three-dimensional characterization of root morphology for maxillary incisors," PLOS ONE, vol. 12, no. 6, pp. e0178728, Jun. 2017. [URL]
R. Zhang, D. Zukić, D. Byrd, A. Enquobahrie, A. Alessio, K. Cleary, and P. Kinahan, "A deformable registration workflow for motion correction in PET-CT guided biopsy," in Society of Nuclear Medicine and Molecular Imaging Annual Meeting, 2017.
Y. Jiang, E. Padgett, M. Hanwell, C. Quammen, C. Harris, S. Waldon, D. Muller, and R. Hovden, "tomviz: Providing Advanced Electron Tomography by Streamlining Alignment, Reconstruction, and 3D Visualization," Microscopy and Microanalysis, vol. 23, no. S1, pp. 222-223, Jul. 2017. [URL]
A. Patwardhan, R. Brandt, S. Butcher, L. Collinson, D. Gault, K. Grünewald, C. Hecksel, J. Huiskonen, A. Iudin, M. Jones, P. Korir, A. Koster, I. Lagerstedt, C. Lawson, D. Mastronarde, M. McCormick, H. Parkinson, P. Rosenthal, S. Saalfeld, H. Saibil, S. Sarntivijai, I. Solanes Valero, S. Subramaniam, J. Swedlow, I. Tudose, M. Winn, and G. Kleywegt, "Building bridges between cellular and molecular structural biology," eLife, vol. 6, pp. e25835, Jul. 2017. [URL]
C. Long and G. Hua, "Correlational Gaussian Processes for Cross-Domain Visual Recognition," in 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2017. [URL]
C. Long, E. Smith, A. Basharat, and A. Hoogs, "A C3D-based convolutional neural network for frame dropping detection in a single video shot," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshop on Media Forensics, 2017. [URL]
S. Gerber and M. Maggioni, "Multiscale Strategies for Computing Optimal Transport," Journal of Machine Learning Research, vol. 18, no. 1, pp. 2440-2471, Jan. 2017. [URL]
M. M McCormick, M. L Palmeri, J. Fillion-Robin, and S. Aylward, "SlicerITKUltrasound: A 3D Slicer extension for scan conversion of B-mode and next-generation ultrasound imaging modalities," The Journal of Open Source Software, vol. 2, no. 10, pp. 153, Feb. 2017. [URL]
M. Hanwell, W. de Jong, and C. Harris, "Open chemistry: RESTful web APIs, JSON, NWChem and the modern web application," Journal of Cheminformatics, vol. 9, no. 1, Dec. 2017. [URL]
F. Ebrahim, A. Ruellas, B. Paniagua, E. Benavides, K. Jepsen, L. Wolford, J. Goncalves, and L. Cevidanes, "Accuracy of biomarkers obtained from cone beam computed tomography in assessing the internal trabecular structure of the mandibular condyle," Oral Surgery, Oral Medicine, Oral Pathology and Oral Radiology, vol. 124, no. 6, pp. 588-599, Dec. 2017. [URL]
Z. Sun and A. Hoogs, "Object insertion and removal in images with mirror reflection," in Proceedings of the IEEE Workshop on Information Forensics and Security, 2017. [URL]
M. Judson, A. Burette, C. Thaxton, A. Pribisko, M. Shen, A. Rumple, W. Del Cid, B. Paniagua, M. Styner, R. Weinberg, and B. Philpot, "Decreased Axon Caliber Underlies Loss of Fiber Tract Integrity, Disproportional Reductions in White Matter Volume, and Microcephaly in Angelman Syndrome Model Mice," The Journal of Neuroscience, vol. 37, no. 31, pp. 7347-7361, Aug. 2017. [URL]
N. Malitsky, A. Chaudhary, S. Jourdain, M. Cowan, P. O’Leary, M. Hanwell, and K. Van Dam, "Building near-real-time processing pipelines with the spark-MPI platform," in Proceedgins of the New York Scientific Data Summit, 2017. [URL]
D. Punzo, J. van der Hulst, J. Roerdink, J. Fillion-Robin, and L. Yu, "SlicerAstro: A 3-D interactive visual analytics tool for HI data," Astronomy and Computing, vol. 19, pp. 45-59, Apr. 2017. [URL]
X. Han, X. Yang, S. Aylward, R. Kwitt, and M. Niethammer, "Efficient registration of pathological images: A joint PCA/image-reconstruction approach," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2017. [URL]
K. Brady, B. Wu, S. Sim, A. Enquobahrie, R. Ortiz, and S. Arikatla, "Modeling Reduced User Experience Caused by Visual Latency," in Advances in Ergonomics Modeling, Usability & Special Populations. Springer International Publishing, 2017, pp. 267-277. [URL]
S. Sim, B. Wu, K. Brady, A. Enquobahrie, R. Ortiz, and S. Arikatla, "Quantifying the Effects of Reduced Update Rate on Motor Performance and User Experience," in Advances in Ergonomics Modeling, Usability & Special Populations. Springer International Publishing, 2017, pp. 255-265. [URL]
L. Tu, A. Porras, S. Ensel, D. Tsering, B. Paniagua, A. Enquobahrie, A. Oh, R. Keating, G. Rogers, and M. Linguraru, "Intracranial Volume Quantification from 3D Photography," in Computer Assisted and Robotic Endoscopy and Clinical Image-Based Procedures. Springer International Publishing, 2017, pp. 116-123. [URL]
S. Gerber, M. Jallais, H. Greer, M. McCormick, S. Montgomery, B. Freeman, D. Kane, D. Chittajallu, N. Siekierski, and S. Aylward, "Automatic Estimation of the Optic Nerve Sheath Diameter from Ultrasound Images," in Imaging for Patient-Customized Simulations and Systems for Point-of-Care Ultrasound. Springer International Publishing, 2017, pp. 113-120. [URL]
M. Jallais, H. Greer, S. Gerber, M. McCormick, D. Chittajallu, N. Siekierski, and S. Aylward, "Ultrasound Augmentation: Rapid 3-D Scanning for Tracking and On-Body Display," in Imaging for Patient-Customized Simulations and Systems for Point-of-Care Ultrasound. Springer International Publishing, 2017, pp. 138-145. [URL]
J. Vimort, M. McCormick, and B. Paniagua, "Computing Bone Morphometric Feature Maps from 3-Dimensional Images," Insight Journal, no. January-December 2017, 2017. [URL]
J. Vimort, M. McCormick, F. Budin, and B. Paniagua, "Computing Textural Feature Maps for N-Dimensional images," Insight Journal, 2017. [URL]
F. Ebrahim, A. Ruellas, B. Paniagua, E. Benavides, J. Goncalves, L. Wolford, and L. Cevidanes, "CBCT Biomarkers That Can Accurately Assess Mandibular Condyle Trabecular Structure," in 017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
L. Gomes, L. Cevidanes, M. Gomes, A. Ruellas, D. Ryan, B. Paniagua, L. Wolford, and J. Goncalves, "Correlation Between Condylar Displacement and Remodeling Changes Following Orthognathic Surgery," in 2017 IADR/AADR/CADR General Session, 2017. [URL]
N. Pentis, S. Pieper, V. Boen, L. Cevidanes, A. Ruellas, M. Yatabe, L. Macron, J. Lopinto, F. Budin, B. Paniagua, M. Styner, and J. Prieto, "Evaluating Dental and Craniofacial Bionetwork for Image Analysis's Dissemination Efforts," in 2017 IADR/AADR/CADR General Session, 2017. [URL]
M. Yatabe, A. Ruellas, L. Gomes, L. Macron, J. Lopinto, B. Paniagua, F. Budin, and L. Cevidanes, "Comparative Study of Three Methods to Compute 3D Craniofacial Angular Measurements," in 2017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
J. Fishbaugh, B. Paniagua, V. Boen, L. Cevidanes, and G. Gerig, "Continuous 4D Shape Analysis of Mandibular Changes," in 2017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
J. Prieto, B. Paniagua, M. Yatabe, A. Ruellas, L. Fattori, L. Muniz, M. Styner, and L. Cevidanes, "Facilitating Experiment Reproducibility Through Data Federation and Image Processing Tools Integration," in 2017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
L. Cevidanes, E. Benavides, B. Paniagua, A. Ruellas, M. Yatabe, L. Gomes, J. Prieto, C. Huang, H. Zhu, M. Styner, and S. Allareddy, "Integrating Clinical and Imaging Markers of Temporomandibular Joint Arthritis," in 2017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
A. Ruellas, F. Copello, M. Yatabe, B. Paniagua, J. Maciel, O. Guariza, and L. Cevidanes, "Unilateral Crossbite Malocclusion: Assessment of Asymmetry," in 2017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
C. Xing, C. Long, H. Guo, Y. Nie, Y. Zhang, D. Zhu, Q. Ma, and M. Tian, "How Does A Camera Look At One 3D CAD Object?," in 2017 IEEE 29th International Conference on Tools with Artificial Intelligence (ICTAI), 2017.
K. Fieldhouse, A. Hoogs, and E. Swears, "Linking Unmanned Systems, Visible and IR Video, Computer Vision, and Humans Together for Real-Time, Squad-Level, Battlefield Situational Awareness: THreat Reconnaissance and Exploitation from Audio-video Target eXtraction (THREAT X)," in AUVSI XPONENTIAL Conference, 2017.
A. Porras, B. Paniagua, A. Enquobahrie, S. Ensel, H. Shah, R. Keating, G. Rogers, and M. Linguraru, "Locally Affine Diffeomorphic Surface Registration for Planning of Metopic Craniosynostosis Surgery," in Medical Image Computing and Computer-Assisted Intervention, 2017. [URL]
P. O'Leary, S. Jhaveri, A. Chaudhary, W. Sherman, K. Martin, A. Vacanti, E. Whiting, J. Money, and S. McKenzie, "Enhancements to VTK enabling scientific visualization in immersive environments," in Proceedings of the IEEE Virtual Reality Conference, 2017. [URL]
J. Moeller, E. Smith, A. Basharat, M. Turek, A. Hoogs, and E. Blasch, "Automatic pattern of life learning in satellite images through graph kernels," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2017.
C. Law, J. Parham, M. Dawkins, P. Tunison, D. Stoup, R. Blue, K. Fieldhouse, M. Turek, A. Hoogs, S. Han, A. Farafard, J. Kerekes, E. Lentilucci, M. Gartley, T. Savakis, T. Rovito, S. Thomas, and C. Stansifer, "Deep learning for object detection and object-based change detection in satellite imagery," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2017.
K. Fieldhouse, A. Hoogs, and E. Swears, "Fusing Visible and Infrared (IR) Video on Mobile Robots, UAVs and Warfighters for Real-Time, Squad-Level Situational Awareness," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2017.
M. Dawkins, R. Collins, and A. Hoogs, "Using Convolutional Neural Networks for Content-Based FMV Retrieval," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2017.
D. Thompson, S. Jourdain, A. Bauer, B. Geveci, R. Maynard, R. Vatsavai, and P. O'Leary, "In Situ Summarization with VTK-m," in Proceedings of the Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization, 2017. [URL]
M. Larsen, J. Ahrens, U. Ayachit, E. Brugger, H. Childs, B. Geveci, and C. Harrison, "The ALPINE In Situ Infrastructure: Ascending from the Ashes of Strawman," in Proceedings of the Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization, 2017. [URL]
S. Birch, M. Lenox, J. Kornegay, B. Paniagua, M. Styner, C. Goodlett, T. Cudd, and S. Washburn, "Maternal choline supplementation in a sheep model of first trimester binge alcohol fails to protect against brain volume reductions in peripubertal lambs," Alcohol, vol. 55, pp. 1-8, Sep. 2016. [URL]
M. Palmeri, T. Glass, R. Gupta, M. McCormick, A. Brown, T. Polascik, S. Rosenzweig, A. Buck, and K. Nightingale, "Comparison between 3D ARFI imaging and mpMRI in detecting clinically-significant prostate cancer lesions," in 2016 IEEE International Ultrasonics Symposium (IUS), 2016. [URL]
S. Shelton, P. Dayton, S. Aylward, and F. Foster, "The application of acoustic angiography to assess the progression of angiogenesis in a spontaneous mouse model of breast cancer," in IEEE International Ultrasonics Symposium (IUS), 2016. [URL]
M. Araujo, S. Siebenaler, E. Dupont, S. Blaisdell, and D. Davila, "Near Real-Time Automated Detection of Small Hazardous Liquid Pipeline Leaks Using Remote Optical Sensing and Machine Learning," in Volume 3: Operations, Monitoring and Maintenance; Materials and Joining, 2016. [URL]
T. Kapur, S. Pieper, A. Fedorov, J. Fillion-Robin, M. Halle, L. O'Donnell, A. Lasso, T. Ungi, C. Pinter, J. Finet, S. Pujol, J. Jagadeesan, J. Tokuda, I. Norton, R. Estepar, D. Gering, H. Aerts, M. Jakab, N. Hata, L. Ibanez, D. Blezek, J. Miller, S. Aylward, W. Grimson, G. Fichtinger, W. Wells, W. Lorensen, W. Schroeder, and R. Kikinis, "Increasing the impact of medical image computing using community-based open-access hackathons: The NA-MIC and 3D Slicer experience," Medical Image Analysis, vol. 33, pp. 176-180, Oct. 2016. [URL]
C. Gueunet, P. Fortin, J. Jomier, and J. Tierny, "Contour forests: Fast multi-threaded augmented contour trees," in 2016 IEEE 6th Symposium on Large Data Analysis and Visualization (LDAV), 2016. [URL]
A. Porras, D. Zukić, A. Equobahrie, G. Rogers, and M. Linguraru, "Personalized Optimal Planning for the Surgical Correction of Metopic Craniosynostosis," in MICCAI Workshop on Clinical Image-based Procedures, 2016.
R. Porter, A. Basharat, R. Collins, M. Turek, and A. Hoogs, "Training and evaluating object detection pipelines with connected components," in Proceedings of the IEEE Applied Imagery Pattern Recognition Workshop, 2016. [URL]
T. Nguyen, C. Phillips, and B. Paniagua, "The use of SPHARM-PDM and mean latitude axis to evaluate airway changes," The Angle Orthodontist, vol. 86, no. 6, pp. 943-948, Nov. 2016. [URL]
U. Ayachit, A. Bauer, E. Duque, G. Eisenhauer, N. Ferrier, J. Gu, K. Jansen, B. Loring, Z. Lukic, S. Menon, D. Morozov, P. O'Leary, R. Ranjan, M. Rasquin, C. Stone, V. Vishwanath, G. Weber, B. Whitlock, M. Wolf, K. Wu, and E. Bethel, "Performance Analysis, Design Considerations, and Applications of Extreme-Scale In Situ Infrastructures," in International Conference for High Performance Computing, Networking, Storage and Analysis, 2016. [URL]
U. Ayachit, B. Whitlock, M. Wolf, B. Loring, B. Geveci, A. Vacanti, and E. Bethel, "The SENSEI Generic In Situ Interface," in Proceedings of the Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization, 2016. [URL]
C. Harris, P. O'Leary, M. Grauer, A. Chaudhary, C. Kotfila, and R. O'Bara, "Dynamic Provisioning and Execution of HPC Workflows Using Python," in Workshop on Python for High-Performance and Scientific Computing, 2016. [URL]
K. Moreland, C. Sewell, W. Usher, L. Lo, J. Meredith, D. Pugmire, J. Kress, H. Schroots, K. Ma, H. Childs, M. Larsen, C. Chen, R. Maynard, and B. Geveci, "VTK-m: Accelerating the Visualization Toolkit for Massively Threaded Architectures," IEEE Computer Graphics and Applications, vol. 36, no. 3, pp. 48-58, May 2016. [URL]
C. Zdanski, S. Davis, Y. Hong, D. Miao, C. Quammen, S. Mitran, B. Davis, M. Niethammer, J. Kimbell, E. Pitkin, J. Fine, L. Fordham, B. Vaughn, and R. Superfine, "Quantitative assessment of the upper airway in infants and children with subglottic stenosis," The Laryngoscope, vol. 126, no. 5, pp. 1225-1231, May 2016. [URL]
S. Shelton, B. Lindsey, R. Gessner, Y. Lee, S. Aylward, H. Lee, E. Cherin, F. Foster, and P. Dayton, "Acoustic angiography: a new high frequency contrast ultrasound technique for biomedical imaging," in SPIE Commercial + Scientific Sensing and Imaging, 2016. [URL]
S. Oh, M. Pandey, I. Kim, and A. Hoogs, "Image-oriented economic perspective on user behavior in multimedia social forums: An analysis on supply, consumption, and saliency," Pattern Recognition Letters, vol. 72, pp. 33-40, Mar. 2016. [URL]
M. Leotta, E. Smith, M. Dawkins, and P. Tunison, "Open source structure-from-motion for aerial video," in Proceedings of the IEEE Winter Conference on Applications of Computer Vision, 2016. [URL]
A. Bauer, H. Abbasi, J. Ahrens, H. Childs, B. Geveci, S. Klasky, K. Moreland, P. O'Leary, V. Vishwanath, B. Whitlock, and E. Bethel, "In Situ Methods, Infrastructures, and Applications on High Performance Computing Platforms," Computer Graphics Forum, vol. 35, no. 3, pp. 577-597, Jun. 2016. [URL]
D. Zukić, Z. Mullen, D. Byrd, P. Kinahan, and A. Enquobahrie, "A web-based platform for a high throughput calibration of PET scans," in Proceedings of the International Congress and Exhibition on Computer Assisted Radiology and Surgery, 2016. [URL]
M. Dawkins, A. Basharat, J. Becker, M. Turek, and A. Hoogs, "Deep architecture for small mover detection in overhead infrared imagery," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2016.
P. Tunison, M. Turek, and A. Hoogs, "Functional scene element modeling for ISR data," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2016.
R. Vetreno, R. Yaxley, B. Paniagua, and F. Crews, "Diffusion tensor imaging reveals adolescent binge ethanol-induced brain structural integrity alterations in adult rats that correlate with behavioral dysfunction," Addiction Biology, vol. 21, no. 4, pp. 939-953, Jul. 2016. [URL]
L. Avila and M. Bailey, "Art in the digital age," IEEE Computer Graphics and Applications, vol. 36, no. 4, pp. 6-7, Jul. 2016. [URL]
I. Oguz, J. Cates, M. Datar, B. Paniagua, T. Fletcher, C. Vachet, M. Styner, and R. Whitaker, "Entropy-based particle correspondence for shape populations," International Journal of Computer Assisted Radiology and Surgery, vol. 11, no. 7, pp. 1221-1232, Jul. 2016. [URL]
Y. Jiang, M. Hanwell, E. Padgett, S. Waldon, D. Muller, and R. Hovden, "Advanced Platform for 3D Visualization, Reconstruction, and Segmentation with Electron Tomography," Microscopy and Microanalysis, vol. 22, no. S3, pp. 2070-2071, Jul. 2016. [URL]
L. Avila and M. Bailey, "Augment your reality," IEEE Computer Graphics and Applications, vol. 36, no. 1, pp. 6-7, Jan. 2016. [URL]
L. Gomes, M. Gomes, J. Gonçalves, A. Ruellas, L. Wolford, B. Paniagua, E. Benavides, and L. Cevidanes, "Cone beam computed tomography-based models versus multislice spiral computed tomography-based models for assessing condylar morphology," Oral Surgery, Oral Medicine, Oral Pathology and Oral Radiology, vol. 121, no. 1, pp. 96-105, Jan. 2016. [URL]
K. Palaniappan, M. Poostchi, H. Aliakbarpour, R. Viguier, J. Fraser, F. Bunyak, A. Basharat, S. Suddarth, E. Blasch, R. Rao, and G. Seetharaman, "Moving object detection for vehicle tracking in Wide Area Motion Imagery using 4D filtering," in 2016 23rd International Conference on Pattern Recognition (ICPR), 2016. [URL]
Z. Sun, J. Baumes, P. Tunison, M. Turek, and A. Hoogs, "Tattoo detection and localization using region-based deep learning," in Proceedings of the IEEE International Conference on Pattern Recognition, 2016. [URL]
S. Aylward, M. McCormick, H. Kang, S. Razzaque, R. Kwitt, and M. Niethammer, "Ultrasound spectroscopy," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2016. [URL]
N. Passat, S. Salmon, J. Armspach, B. Naegel, C. Prud’homme, H. Talbot, A. Fortin, S. Garnotel, O. Merveille, O. Miraucourt, R. Tarabay, V. Chabannes, A. Dufour, A. Jezierska, O. Balédent, E. Durand, L. Najman, M. Szopos, A. Ancel, J. Baruthio, M. Delbany, S. Fall, G. Pagé, O. Génevaux, M. Ismail, P. de Sousa, M. Thiriet, and J. Jomier, "From Real MRA to Virtual MRA: Towards an Open-Source Framework," in Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016. Springer International Publishing, 2016, pp. 335-343. [URL]
V. Arikatla, R. Ortiz, S. De, and A. Enquobahrie, "A Unified Framework for Haptic Interaction in Multimodal Virtual Environments," Studies in Health Technology and Informatics, vol. 220, pp. 19-24, 2016.
V. Arikatla, R. Ortiz, T. Halic, S. Radigan, D. Thompson, S. De, and A. Enquobahrie, "An Approach for Automated Scene Management in Real-Time Medical Simulation Framework," Studies in Health Technology and Informatics, vol. 220, pp. 25-28, 2016.
C. Quammen, R. Taylor, P. Krajcevski, S. Mitran, A. Enquobahrie, R. Superfine, B. Davis, S. Davis, and C. Zdanski, "The Virtual Pediatric Airways Workbench," Studies in Health Technology and Informatics, vol. 220, pp. 295-300, 2016.
D. Zukić, M. McCormick, G. Gerig, and P. Yushkevich, "RLEImage: run-length encoded memory compression scheme for an itk::Image," The Insight Journal, 2016. [URL]
D. Zukić, J. Vicory, M. McCormick, L. Wisse, G. Gerig, P. Yushkevich, and S. Aylward, "nD morphological contour interpolation," The Insight Journal, 2016. [URL]
B. Paniagua, A. Ruellas, M. Yatabe, L. Gomes, M. Styner, S. Pizer, and L. Cevidanes, "Computer Assisted subclinical classification of TMJ OA," in 2016 AADR/CADR Annual Meeting (Los Angeles, California), 2016. [URL]
B. Lessley, R. Binyahib, R. Maynard, and H. Childs, "External Facelist Calculation with Data-Parallel Primitives," in Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization, 2016. [URL]
X. Yang, X. Han, E. Park, S. Aylward, R. Kwitt, and M. Niethammer, "Registration of Pathological Images," in Proceedings of the International Workshop on Simulation and Synthesis in Medical Imaging, 2016. [URL]
M. Dawkins, Z. Sun, J. Becker, A. Basharat, A. Hoogs, and M. Turek, "Track Object Type Classification Across a Range of Scales and Types of Video," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2016.
M. Hanwell, K. Martin, A. Chaudhary, and L. Avila, "The Visualization Toolkit (VTK): Rewriting the rendering code for modern graphics cards," SoftwareX, vol. 1-2, pp. 9-12, Sep. 2015. [URL]
B. Wood, D. Zukić, J. Qi, C. Meyer, R. Ortiz, C. Mendoza, A. Enquobahrie, M. Linguraru, and G. Rogers, "Evaluation of Fronto-Orbital Advancement for Coronal Synostosis using a 3D Statistical Shape Model," in Proceedings of the Congress of International Society of Craniofacial Surgery, 2015.
M. Turek, A. Basharat, K. Fieldhouse, P. Tunison, D. Stoup, C. Atkins, and A. Hoogs, "Real-time, full-frame wide area motion imagery analytics," in Proceedings of the MSS National Symposium on Passive Sensors, 2015.
J. Olasky, G. Sankaranarayanan, N. Seymour, J. Magee, A. Enquobahrie, M. Lin, R. Aggarwal, L. Brunt, S. Schwaitzberg, C. Cao, S. De, and D. Jones, "Identifying Opportunities for Virtual Reality Simulation in Surgical Education: A Review of the Proceedings from the Innovation, Design, and Emerging Alliances in Surgery (IDEAS) Conference: VR Surgery," Surgical Innovation, vol. 22, no. 5, pp. 514-521, Oct. 2015. [URL]
B. Paniagua, D. Zukić, R. Ortiz, S. Aylward, B. Golden, T. Nguyen, and A. Enquobahrie, "Ultrasound-Guided Navigation System for Orthognathic Surgery," in MICCAI Workshop on Augmented Environments for Computer-Assisted Interventions, 2015. [URL]
W. Schroeder, R. Maynard, and B. Geveci, "Flying edges: A high-performance scalable isocontouring algorithm," in Proceedings of the IEEE Symposium on Large Data Analysis and Visualization, 2015. [URL]
V. Arikatla and S. De, "An iterative predictor–corrector approach for modeling static and kinetic friction in interactive simulations," Graphical Models, vol. 82, pp. 29-42, Nov. 2015. [URL]
P. O'Leary, M. Christon, S. Jourdain, C. Harris, M. Berndt, and A. Bauer, "HPCCloud: A Cloud/Web-Based Simulation Environment," in IEEE International Conference on Cloud Computing Technology and Science, 2015. [URL]
L. Avila and M. Bailey, "High Tech @ Home," IEEE Computer Graphics and Applications, vol. 35, no. 3, pp. 8-9, May 2015. [URL]
B. Wu, S. Sim, A. Enquobahrie, and R. Ortiz, "Effects of visual latency on visual-haptic experience of stiffness," in International Workshop on Quality of Multimedia Experience, 2015. [URL]
L. Avila and M. Bailey, "The Wearable Revolution," IEEE Computer Graphics and Applications, vol. 35, no. 2, pp. 104-104, Mar. 2015. [URL]
S. Philip, B. Summa, J. Tierny, P. Bremer, and V. Pascucci, "Distributed Seams for Gigapixel Panoramas," IEEE Transactions on Visualization and Computer Graphics, vol. 21, no. 3, pp. 350-362, Mar. 2015. [URL]
S. Sua, A. Chaudhary, P. O’Leary, B. Geveci, W. Sherman, H. Nieto, and L. Francisco-Revilla, "Virtual reality enabled scientific visualization workflow," in IEEE Workshop on Everyday Virtual Reality, 2015. [URL]
D. Chittajallu, S. Florian, R. Kohler, Y. Iwamoto, J. Orth, R. Weissleder, G. Danuser, and T. Mitchison, "In vivo cell-cycle profiling in xenograft tumors by quantitative intravital microscopy," Nature Methods, vol. 12, no. 6, pp. 577-585, Jun. 2015. [URL]
J. Qi, D. Zukić, B. Wood, G. Rogers, C. Meyer, R. Ortiz, C. Mendoza, A. Enquobahrie, and M. Linguraru, "Postoperative Evaluation of Craniosynostosis based on 3D Statistical Shape Model," in Proceedings of the International Congress and Exhibition on Computer Assisted Radiology and Surgery, 2015.
R. Ortiz, D. Zukić, J. Qi, B. Wood, G. Rogers, A. Enquobahrie, and M. Linguraru, "Stress Analysis Of Cranial Bones For Craniosynostosis Surgical Correction," in Proceedings of the International Congress and Exhibition on Computer Assisted Radiology and Surgery, 2015.
S. Shelton, Y. Lee, M. Lee, E. Cherin, F. Foster, S. Aylward, and P. Dayton, "Quantification of Microvascular Tortuosity during Tumor Evolution Using Acoustic Angiography," Ultrasound in Medicine & Biology, vol. 41, no. 7, pp. 1896-1904, Jul. 2015. [URL]
F. Drakopoulos, R. Ortiz, A. Enquobahrie, and N. Chrisochoides, "Image-to-Mesh Conversion for Arteriovenous Malformation Surgical Simulators," in National Congress on Computational Mechanics, 2015.
L. Avila and M. Bailey, "Advanced Display Technologies," IEEE Computer Graphics and Applications, vol. 35, no. 1, pp. 96-96, Jan. 2015. [URL]
L. Encarnacao, Y. Chuang, A. Stork, D. Kasik, T. Rhyne, L. Avila, J. Kohlhammer, L. Encarnacao, J. LaViola, M. Tory, J. Dill, G. Domik, G. Owen, and P. Wong, "Future Directions in Computer Graphics and Visualization: From CG&A's Editorial Board," IEEE Computer Graphics and Applications, vol. 35, no. 1, pp. 20-32, Jan. 2015. [URL]
L. Hagen, O. Uzuner, C. Kotfila, T. Harrison, and D. Lamanna, "Understanding citizens' direct policy suggestions to the federal government: a natural language processing and topic modeling approach," in Hawaii International Conference on System Sciences, 2015. [URL]
A. Bauer, B. Geveci, and W. Schroeder, "The Catalyst User's Guide v2.0," Kitware, Inc., Feb. 2015.
C. Dumas, D. LaManna, T. Harrison, S. Ravi, C. Kotfila, N. Gervais, L. Hagen, and F. Chen, "Examining political mobilization of online communities through e-petitioning behavior in We the People," Big Data & Society, vol. 2, no. 2, pp. 205395171559817, Dec. 2015. [URL]
X. Liu, M. Niethammer, R. Kwitt, N. Singh, M. McCormick, and S. Aylward, "Low-Rank Atlas Image Analyses in the Presence of Pathologies," IEEE Transactions on Medical Imaging, vol. 34, no. 12, pp. 2583-2591, Dec. 2015. [URL]
S. Dargar, R. Kennedy, W. Lai, V. Arikatla, and S. De, "Towards immersive virtual reality (iVR): a route to surgical expertise," Journal of Computational Surgery, vol. 2, no. 1, Dec. 2015. [URL]
R. Hovden, M. Hanwell, U. Ayachit, Y. Jiang, R. Maynard, and D. Muller, "Repeatable and Transferable Processing for Electron Tomography: An Open Platform for Visualization and Reconstruction of 3D Materials," Microscopy and Microanalysis, vol. 21, no. S3, pp. 2407-2408, Aug. 2015. [URL]
D. Zukić, "An Efficient Inflation Method for Segmentation of Medical 3D Images," Ph.D. dissertation, University of Siegen, 2015. [URL]
A. Hoogs, A. Perera, R. Collins, A. Basharat, K. Fieldhouse, C. Atkins, L. Sherrill, B. Boeckel, R. Blue, M. Woehlke, C. Greco, Z. Sun, E. Swears, N. Cuntoor, J. Luck, B. Drew, D. Hanson, D. Rowley, J. Kopaz, T. Rude, D. Keefe, A. Srivastava, S. Khanwalkar, A. Kumar, C. Chen, J. Aggarwal, L. Davis, Y. Yacoob, A. Jain, D. Liu, S. Chang, B. Song, A. Roy-Chowdhury, K. Sullivan, J. Tesic, S. Chandrasekaran, B. Manjunath, X. Wang, Q. Ji, K. Reddy, J. Liu, M. Shah, K. Chang, T. Chen, and M. Desai, "An end-to-end system for content-based video retrieval using behavior, actions, and appearance with interactive query refinement," in Proceedings of the IEEE Conference on Advanced Video and Signal Based Surveillance, 2015. [URL]
K. Martin and B. Hoffman, Mastering CMake: a cross-platform build system. Kitware Inc, 2015.
F. Drakopoulos, R. Ortiz, A. Enquobahrie, D. Sasaki-Adams, and N. Chrisochoides, "Tetrahedral Image-to-Mesh Conversion Software for Anatomic Modeling of Arteriovenous Malformations," Procedia Engineering, vol. 124, pp. 278-290, 2015. [URL]
A. Ribés, B. Lorendeau, J. Jomier, and Y. Fournier, "In-Situ Visualization in Computational Fluid Dynamics Using Open-Source tools: Integration of Catalyst into Code_Saturne," in Topological and Statistical Methods for Complex Data. Springer Berlin Heidelberg, 2015, pp. 21-37. [URL]
V. Arikatla, R. Ortiz, D. Thompson, D. Sasaki-Adams, A. Enquobahrie, and S. De, "A hybrid approach to simulate tissue behavior during surgical simulation," in International Conference on Computational & Mathematical Biomedical Engineering, 2015.
L. Hagen, T. Harrison, Ö. Uzuner, T. Fake, D. Lamanna, and C. Kotfila, "Introducing textual analysis tools for policy informatics: a case study of e-petitions," in Proceedings of the International Conference on Digital Government Research, 2015. [URL]
M. Leotta, P. Tunison, E. Smith, and M. Dawkins, "MAP-Tk: Motion imagery Aerial Photogrammetry Toolkit," in Proceedings of the MSS National Symposium on Passive Sensors, 2015.
L. He, R. Ortiz, A. Enquobahrie, and D. Manocha, "Interactive continuous collision detection for topology changing models using dynamic clustering," in Proceedings of the Symposium on Interactive 3D Graphics and Games, 2015. [URL]
U. Ayachit, A. Bauer, B. Geveci, P. O'Leary, K. Moreland, N. Fabian, and J. Mauldin, "ParaView Catalyst: Enabling In Situ Data Analysis and Visualization," in Proceedings of the Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization, 2015. [URL]
R. Jain, J. Becker, V. Mahadevan, P. Shriwise, R. O’Bara, and I. Grindeanu, "OCC-based meshing for RGG applications using MeshKit," in SIAM Conference on Computational Science and Engineering, 2015.
L. Avila and M. Bailey, "Virtual Reality for the Masses," IEEE Computer Graphics and Applications, vol. 34, no. 5, pp. 103-104, Sep. 2014. [URL]
I. Aalbersberg, P. Cos Alvarez, J. Jomier, C. Marion, and E. Zudilova-Seinstra, "Bringing 3D visualization into the online research article," Information Services & Use, vol. 34, no. 1-2, pp. 27-37, Sep. 2014. [URL]
S. Jhaveri, A. Chaudhary, and L. Avila, "Volume rendering improvements in VTK," Kitware Source, no. 31, Oct. 2014.
K. Fieldhouse, M. Leotta, A. Basharat, R. Blue, D. Stoup, C. Atkins, L. Sherrill, B. Boeckel, P. Tunison, J. Becker, M. Dawkins, M. Woehlke, R. Collins, M. Turek, and A. Hoogs, "KWIVER: An open source cross-platform video exploitation framework," in Proceedings of the IEEE Applied Imagery Pattern Recognition Workshop, 2014. [URL]
E. Swears, A. Basharat, A. Hoogs, and E. Blasch, "Probabilistic sub-GRAph Matching (PGRAM) for video and text fusion," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2014.
J. Ahrens, S. Jourdain, P. OLeary, J. Patchett, D. Rogers, and M. Petersen, "An Image-Based Approach to Extreme Scale in Situ Visualization and Analysis," in International Conference for High Performance Computing, Networking, Storage and Analysis, 2014. [URL]
Y. Hong, B. Davis, J. Marron, R. Kwitt, N. Singh, J. Kimbell, E. Pitkin, R. Superfine, S. Davis, C. Zdanski, and M. Niethammer, "Statistical atlas construction via weighted functional boxplots," Medical Image Analysis, vol. 18, no. 4, pp. 684-698, May 2014. [URL]
A. Basharat, M. Turek, Y. Xu, C. Atkins, D. Stoup, K. Fieldhouse, P. Tunison, and A. Hoogs, "Real-time multi-target tracking at 210 megapixels/second in Wide Area Motion Imagery," in Proceedings of the IEEE Winter Conference on Applications of Computer Vision, 2014. [URL]
L. Torres, H. Azimian, and A. Enquobahrie, "A user-friendly automated port placement planning system for laparoscopic robotic surgery," in SPIE Medical Imaging, 2014. [URL]
R. Kwitt, S. Razzaque, J. Lowell, and S. Aylward, "Variability sensitivity of dynamic texture based recognition in clinical CT data," in SPIE Medical Imaging, 2014. [URL]
H. Karimabadi, V. Roytershteyn, H. Vu, Y. Omelchenko, J. Scudder, W. Daughton, A. Dimmock, K. Nykyri, M. Wan, D. Sibeck, M. Tatineni, A. Majumdar, B. Loring, and B. Geveci, "The link between shocks, turbulence, and magnetic reconnection in collisionless plasmas," Physics of Plasmas, vol. 21, no. 6, pp. 062308, Jun. 2014. [URL]
E. Swears, A. Hoogs, Q. Ji, and K. Boyer, "Complex Activity Recognition Using Granger Constrained DBN (GCDBN) in Sports and Surveillance Video," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2014. [URL]
M. Dawkins, Z. Sun, A. Basharat, A. Perera, and A. Hoogs, "Tracking nautical objects in real-time via layered saliency detection," in SPIE Defense, Security, and Sensing Motion Imagery for ISR and Situational Awareness, 2014. [URL]
D. Katz, S. Choi, H. Lapp, K. Maheshwari, F. Loffler, M. Turk, M. Hanwell, N. Wilkins-Diehr, J. Hetherington, J. Howison, S. Swenson, G. Allen, A. Elster, B. Berriman, and C. Venters, "Summary of the First Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE1)," Journal of Open Research Software, vol. 2, no. 1, pp. e6, Jul. 2014. [URL]
E. Blasch, J. Nagy, A. Aved, E. Jones, W. Pottenger, A. Basharat, A. Hoogs, M. Schneider, R. Hammoud, G. Chen, D. Shen, and H. Ling, "Context aided video-to-text information fusion," in International Conference on Information Fusion, 2014.
Z. Sun, M. Leotta, A. Hoogs, R. Blue, R. Neuroth, J. Vasquez, A. Perera, M. Turek, and E. Blasch, "Vehicle change detection from aerial imagery using detection response maps," in SPIE Defense, Security, and Sensing Motion Imagery for ISR and Situational Awareness, 2014. [URL]
J. Bischoff, Y. Dai, C. Goodlett, B. Davis, and M. Bandi, "Incorporating population-level variability in orthopedic biomechanical analysis: a review," Journal of Biomechanical Engineering, vol. 136, no. 2, pp. 021004, Feb. 2014. [URL]
Y. Xu, A. Basharat, J. Becker, and A. Hoogs, "Complex algorithm optimization through probabilistic search of its configuration tree," in Proceedings of the IEEE Conference on Advanced Video and Signal Based Surveillance, 2014. [URL]
M. Dawkins, A. Perera, and A. Hoogs, "Real-time heads-up display detection in video," in Proceedings of the IEEE Conference on Advanced Video and Signal Based Surveillance, 2014. [URL]
S. Oh, M. Pandey, I. Kim, A. Hoogs, and J. Baumes, "Personalized Economy of Images in Social Forums: An Analysis on Supply, Consumption, and Saliency," in Proceedings of the IEEE International Conference on Pattern Recognition, 2014. Winner, Best Industry-Related Paper Award. [URL]
L. Ibanez, W. Schroeder, and M. Hanwell, "Practicing Open Science," in Implementing Reproducible Research. Chapman and Hall/CRC, 2014.
J. Finet, R. Ortiz, J. Andruejol, A. Enquobahrie, J. Jomier, J. Payne, and S. Aylward, "Bender: An Open Source Software for Efficient Model Posing and Morphing," in Biomedical Simulation. Springer International Publishing, 2014, pp. 203-210. [URL]
D. Zukić, A. Vlasák, J. Egger, D. Hořínek, C. Nimsky, and A. Kolb, "Robust Detection and Segmentation for Diagnosis of Vertebral Diseases using Routine MR Images," Computer Graphics Forum, vol. 33, no. 6, pp. 190-204, 2014. [URL]
Y. Liu, A. Kot, F. Drakopoulos, C. Yao, A. Fedorov, A. Enquobahrie, O. Clatz, and N. Chrisochoides, "An ITK implementation of a physics-based non-rigid registration method for brain deformation in image-guided neurosurgery," Frontiers in Neuroinformatics, vol. 8, pp. 33, 2014. [URL]
M. McCormick, X. Liu, J. Jomier, C. Marion, and L. Ibanez, "ITK: enabling reproducible research and open science," Frontiers in Neuroinformatics, vol. 8, 2014. [URL]
L. Avila and M. Bailey, "From real to digital, and vice versa," IEEE Computer Graphics and Applications, vol. 34, no. 4, pp. 80-c3, 2014.
A. Chaudhary, C. Goodlett, and D. Thompson, "Transitions tutorial for KiwiViewer and VES," Kitware Source, no. 28, 2014.
M. Hanwell, A. Chaudhary, J. Baumes, and B. Geveci, "VTK's second Google Summer of Code," Kitware Source, no. 31, 2014.
J. Levine, D. Thompson, J. Bennett, P. Bremer, A. Gyulassy, V. Pascucci, and P. Pébay, "Analysis of Uncertain Scalar Data with Hixels," in Scientific Visualization. Springer London, 2014, pp. 35-44. [URL]
J. Snape, S. Guy, J. van den Berg, and D. Manocha, "Smooth Coordination and Navigation for Multiple Differential-Drive Robots," in Internation Symposium on Experimental Robotics, 2014. [URL]
Y. Xu, D. Song, and A. Hoogs, "An Efficient Online Hierarchical Supervoxel Segmentation Algorithm for Time-critical Applications," in Proceedings of the British Machine Vision Conference, 2014. [URL]
Y. Hong, R. Kwitt, N. Singh, B. Davis, N. Vasconcelos, and M. Niethammer, "Geodesic Regression on the Grassmannian," in Proceedings of the European Conference on Computer Vision, 2014. [URL]
X. Liu, M. Niethammer, R. Kwitt, M. McCormick, and S. Aylward, "Low-Rank to the Rescue – Atlas-Based Analyses in the Presence of Pathologies," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2014. [URL]
K. Cleary, R. Khare, A. Enquobahrie, P. Kinahan, G. Esposito, and F. Banovac, "Evaluation of a method using low-radiation dose amplitude gated phase matched PET-CT images for guided liver biopsy," in Proceedings of the International Congress and Exhibition on Computer Assisted Radiology and Surgery, 2014.
M. Dawkins and A. Hoogs, "Automatic image-plane aligned obstruction detection in EO and IR video," in Proceedings of the MSS National Symposium on Passive Sensors, 2014.
S. Jourdain, S. Wittenburg, and P. O'Leary, "Python enabled ParaViewWeb for HPC analysis and visualization," in Workshop on Python for High-Performance and Scientific Computing, 2014.
U. Ayachit and B. Geveci, "Scientific data analysis and visualization at scale in VTK/ParaView with NumPy," in Workshop on Python for High-Performance and Scientific Computing, 2014.
D. Williams, T. Bremer, C. Doutriaux, J. Patchett, S. Williams, G. Shipman, R. Miller, D. Pugmire, B. Smith, C. Steed, E. Bethel, H. Childs, H. Krishnan, P. Prabhat, M. Wehner, C. Silva, E. Santos, D. Koop, T. Ellqvist, J. Poco, B. Geveci, A. Chaudhary, A. Bauer, A. Pletzer, D. Kindig, G. Potter, and T. Maxwell, "Ultrascale visualization of climate data," Computer, vol. 46, no. 9, pp. 68-76, Sep. 2013. [URL]
J. Haase, P. Mishra, A. Stephens, R. Haggerty, C. Quammen, R. Taylor, E. Yeh, M. Basrai, and K. Bloom, "A 3D Map of the Yeast Kinetochore Reveals the Presence of Core and Accessory Centromere-Specific Histone," Current Biology, vol. 23, no. 19, pp. 1939-1944, Oct. 2013. [URL]
I. Csapo, B. Davis, Y. Shi, M. Sanchez, M. Styner, and M. Niethammer, "Longitudinal image registration with temporally-dependent image similarity measure," IEEE Transactions on Medical Imaging, vol. 32, no. 10, pp. 1939-1951, Oct. 2013. [URL]
Y. Zhang, Y. Zhang, E. Swears, N. Larios, Z. Wang, and Q. Ji, "Modeling Temporal Interactions with Interval Temporal Bayesian Networks for Complex Activity Recognition," IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 35, no. 10, pp. 2468-2483, Oct. 2013. [URL]
R. Kwitt, N. Vasconcelos, S. Razzaque, and S. Aylward, "Localizing target structures in ultrasound video – A phantom study," Medical Image Analysis, vol. 17, no. 7, pp. 712-722, Oct. 2013. [URL]
D. Thompson, J. Bennett, C. Seshadhri, and A. Pinar, "A provably-robust sampling method for generating colormaps of large data," in 2013 IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV), 2013. [URL]
R. Khare, G. Sala, P. Kinahan, G. Esposito, F. Banovac, K. Cleary, and A. Enquobahrie, "Experimental evaluation of a deformable registration algorithm for motion correction in PET-CT guided biopsy," in IEEE Nuclear Science Symposium and Medical Imaging Conference, 2013. [URL]
D. Pace, S. Aylward, and M. Niethammer, "A Locally Adaptive Regularization Based on Anisotropic Diffusion for Deformable Image Registration of Sliding Organs," IEEE Transactions on Medical Imaging, vol. 32, no. 11, pp. 2114-2126, Nov. 2013. [URL]
H. Childs, B. Geveci, W. Schroeder, J. Meredith, K. Moreland, C. Sewell, T. Kuhlen, and E. Bethel, "Research Challenges for Visualization Software," Computer, vol. 46, no. 5, pp. 34-42, May 2013. [URL]
F. Porikli, F. Bremond, S. Dockstader, J. Ferryman, A. Hoogs, B. Lovell, S. Pankanti, B. Rinner, P. Tu, and P. Venetianer, "Video surveillance: past, present, and now the future [DSP Forum]," IEEE Signal Processing Magazine, vol. 30, no. 3, pp. 190-198, May 2013. [URL]
A. Stephens, R. Haggerty, P. Vasquez, L. Vicci, C. Snider, F. Shi, C. Quammen, C. Mullins, J. Haase, R. Taylor, J. Verdaasdonk, M. Falvo, Y. Jin, M. Forest, and K. Bloom, "Pericentric chromatin loops function as a nonlinear spring in mitotic force balance," The Journal of Cell Biology, vol. 200, no. 6, pp. 757-772, Mar. 2013. [URL]
B. Paniagua, O. Emodi, J. Hill, J. Fishbaugh, L. Pimenta, S. Aylward, A. Enquobahrie, G. Gerig, J. Gilmore, J. van Aalst, and M. Styner, "3D of brain shape and volume after cranial vault remodeling surgery for craniosynostosis correction in infants," in SPIE Medical Imaging, 2013. [URL]
V. Revanna Shivaprabhu, A. Enquobahrie, Z. Mullen, and S. Aylward, "Accelerating ultrasound image analysis research through publically available database," in SPIE Medical Imaging, 2013. [URL]
A. Enquobahrie, V. Shivaprabhu, S. Aylward, J. Finet, K. Cleary, and R. Alterovitz, "Patient-specific port placement for laparoscopic surgery using atlas-based registration," in SPIE Medical Imaging, 2013. [URL]
E. Swears, A. Hoogs, and R. Blue, "Recognizing Activity Based Scene Elements in Video," in Automatic Target Recognition Working Group, 2013.
Y. Xu, S. Oh, and A. Hoogs, "A Minimum Error Vanishing Point Detection Approach for Uncalibrated Monocular Images of Man-Made Environments," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2013. [URL]
A. Vaccarella, E. De Momi, A. Enquobahrie, and G. Ferrigno, "Unscented Kalman Filter Based Sensor Fusion for Robust Optical and Electromagnetic Tracking in Surgical Navigation," IEEE Transactions on Instrumentation and Measurement, vol. 62, no. 7, pp. 2067-2081, Jul. 2013. [URL]
L. Ibanez, X. Liu, and M. McCormick, "ITK Bar Camp: Growing the ITK Community," Kitware Source, no. 24, Jan. 2013.
M. McCormick, "New infrastructure for easy multi-threading in itkv4," Kitware Source, no. 24, Jan. 2013.
R. Maynard, K. Moreland, U. Atyachit, B. Geveci, and K. Ma, "Optimizing threshold for extreme scale analysis," in IS&T/SPIE Electronic Imaging, 2013. [URL]
R. Gessner, A. Hanson, S. Feingold, A. Cashion, A. Corcimaru, B. Wu, C. Mullins, S. Aylward, L. Reid, and P. Dayton, "Functional ultrasound imaging for assessment of extracellular matrix scaffolds used for liver organoid formation," Biomaterials, vol. 34, no. 37, pp. 9341-9351, Dec. 2013. [URL]
S. Cox, D. Lipsa, I. Davies, and R. Laramee, "Visualizing the dynamics of two-dimensional foams with FoamVis," Colloids and Surfaces A: Physicochemical and Engineering Aspects, vol. 438, pp. 28-32, Dec. 2013. [URL]
W. de Jong, A. Walker, and M. Hanwell, "From data to analysis: linking NWChem and Avogadro with the syntax and semantics of Chemical Markup Language," Journal of Cheminformatics, vol. 5, no. 1, Dec. 2013. [URL]
J. Bischoff, B. Davis, J. Seebeck, A. Henderson, J. Zuhars, P. Marion, and C. Goodlett, "Verification and Validation of an Open Source–Based Morphology Analysis Platform to Support Implant Design," Journal of Medical Devices, vol. 7, no. 4, pp. 040903, Dec. 2013. [URL]
A. Stephens, C. Quammen, B. Chang, J. Haase, R. Taylor, and K. Bloom, "The spatial segregation of pericentric cohesin and condensin in the mitotic spindle," Molecular Biology of the Cell, vol. 24, no. 24, pp. 3909-3919, Dec. 2013. [URL]
E. Swears, A. Hoogs, and K. Boyer, "Pyramid Coding for Functional Scene Element Recognition in Video Scenes," in Proceedings of the IEEE International Conference on Computer Vision, 2013. [URL]
Y. Xu, S. Oh, F. Yang, Z. Jiang, N. Cuntoor, A. Hoogs, and L. Davis, "System and algorithms on detection of objects embedded in perspective geometry using monocular cameras," in Proceedings of the IEEE Conference on Advanced Video and Signal Based Surveillance, 2013. [URL]
M. McCormick and T. Varghese, "An Approach to Unbiased Subsample Interpolation for Motion Tracking," Ultrasonic Imaging, vol. 35, no. 2, pp. 76-89, Apr. 2013. [URL]
Y. Hong, M. Niethammer, J. Andruejol, J. Kimbell, E. Pitkin, R. Superfine, S. Davis, C. Zdanski, and B. Davis, "A pediatric airway atlas and its application in subglottic stenosis," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2013. [URL]
D. Lipşa, R. Laramee, S. Cox, and I. Davies, "Visualizing 3D Time-Dependent Foam Simulation Data," in Advances in Visual Computing. Springer Berlin Heidelberg, 2013, pp. 255-265. [URL]
S. Philip, B. Summa, J. Tierny, P. Bremer, and V. Pascucci, "Scalable Seams for Gigapixel Panoramas," Eurographics Symposium on Parallel Graphics and Visualization, pp. 8 pages, 2013. [URL]
M. Grauer, P. Reynolds, M. Hoogstoel, F. Budin, M. Styner, and I. Oguz, "A midas plugin to enable construction of reproducible web-based image processing pipelines," Frontiers in Neuroinformatics, vol. 7, pp. 46, 2013. [URL]
F. Budin, M. Hoogstoel, P. Reynolds, M. Grauer, S. O'Leary-Moore, and I. Oguz, "Fully automated rodent brain MR image processing pipeline on a Midas server: from acquired images to region-based statistics," Frontiers in Neuroinformatics, vol. 7, pp. 15, 2013. [URL]
A. Chernikov, P. Foteinos, Y. Liu, M. Audette, A. Enquobahrie, and N. Chrisochoides, "Tetrahedral Image-to-Mesh Conversion Approaches for Surgery Simulation and Navigation," in Image-Based Geometric Modeling and Mesh Generation. Springer, 2013, pp. 69-84.
W. Silva, B. Burnett, A. Chaudhary, D. DeMarle, and C. Harris, "ClimatePipes: User-friendly data access, manipulation, analysis & visualization of community climate models," Kitware Source, no. 26, 2013.
A. Bauer, A. Chaudhary, T. Maxwell, B. Nouanesengsy, and J. Patchett, "Exploratory climate data visualization and analysis using DV3D and ParaView in UV-CDAT," Kitware Source, no. 25, 2013.
M. Hanwell, C. Harris, and A. Vacanti, "High-performance computing made easy with MoleQueue," Kitware Source, no. 24, 2013.
M. Baitsch, A. Chaudhary, and D. Truong, "Sketchalyze: Structural analysis goes mobile," Kitware Source, no. 27, 2013.
K. Martin, B. Hoffman, and A. Cedilnik, Mastering CMake: a cross-platform build system, 6. ed. Kitware, 2013.
J. Snape and D. Manocha, "Goal velocity obstacles for spatial navigation of multiple autonomous robots or virtual agents," in Autonomous Robots and Multirobot Systems, 2013.
J. Snape, S. Guy, M. Lin, and D. Manocha, "Local and global planning for collision-free navigation in video games," in Planning in Games Workshop, 2013.
H. Karimabadi, B. Loring, P. O'Leary, A. Majumdar, M. Tatineni, and B. Geveci, "In-situ visualization for global hybrid simulations," in Proceedings of the Conference on Extreme Science and Engineering Discovery Environment Gateway to Discovery, 2013. [URL]
J. Brandt, T. Tucker, A. Gentile, D. Thompson, V. Kuhns, and J. Repik, "High fidelity data collection and transport service applied to the cray xe6/xk6," in Proceedings of the Cray User Group, 2013.
R. Kwitt, D. Pace, M. Niethammer, and S. Aylward, "Studying Cerebral Vasculature Using Structure Proximity and Graph Kernels," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2013. [URL]
Y. Hong, B. Davis, J. Marron, R. Kwitt, and M. Niethammer, "Weighted functional boxplot with application to statistical atlas construction," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2013.
C. Marion, J. Pouderoux, J. Jomier, S. Jourdain, M. Hanwell, and U. Ayachit, "A hybrid visualization system for molecular models," in Proceedings of the International Conference on 3D Web Technology, 2013. [URL]
J. Snape and D. Manocha, "Goal velocity obstacles for spatial navigation of multiple virtual agents," in Proceedings of the International Conference on Autonomous Agents and Multi-Agent Systems, 2013.
K. Moreland, B. Geveci, K. Ma, and R. Maynard, "A classification of scientific visualization algorithms for massive threading," in Proceedings of the International Workshop on Ultrascale Visualization, 2013. [URL]
B. Nouanesengsy, J. Patchett, J. Ahrens, A. Bauer, A. Chaudhary, R. Miller, B. Geveci, G. Shipman, and D. Williams, "A model for optimizing file access patterns using spatio-temporal parallelism," in Proceedings of the International Workshop on Ultrascale Visualization, 2013. [URL]
J. Woodring, J. Ahrens, T. Tautges, T. Peterka, V. Vishwanath, and B. Geveci, "On-demand unstructured mesh translation for reducing memory pressure during in situ analysis," in Proceedings of the International Workshop on Ultrascale Visualization, 2013. [URL]
M. Hanwell, A. Perera, W. Turner, P. O'Leary, K. Osterdahl, B. Hoffman, and W. Schroeder, "Sustainable Software Ecosystems for Open Science," in Workshop on Sustainable Software: Practices and Experiences, 2013. [URL]
M. Ryoo, A. Hoogs, A. Basharat, and S. Oh, "Human activity recognition for visual surveillance," presented at 2012 9th IEEE International Conference on Advanced Video and Signal Based Surveillance (AVSS), 2012. [URL]
R. Gessner, S. Aylward, and P. Dayton, "Mapping Microvasculature with Acoustic Angiography Yields Quantifiable Differences between Healthy and Tumor-bearing Tissue Volumes in a Rodent Model," Radiology, vol. 264, no. 3, pp. 733-740, Sep. 2012. [URL]
A. Vaccarella, A. Enquobahrie, G. Ferrigno, and E. De Momi, "Modular multiple sensors information management for computer-integrated surgery: Modular multiple sensors information management," The International Journal of Medical Robotics and Computer Assisted Surgery, vol. 8, no. 3, pp. 253-260, Sep. 2012. [URL]
K. Reddy, N. Cuntoor, A. Perera, and A. Hoogs, "Human Action Recognition in Large-Scale Datasets Using Histogram of Spatiotemporal Gradients," in Proceedings of the IEEE Conference on Advanced Video and Signal Based Surveillance, 2012. [URL]
R. Kwitt, N. Vasconcelos, N. Rasiwasia, A. Uhl, B. Davis, M. Häfner, and F. Wrba, "Endoscopic image analysis in semantic space," Medical Image Analysis, vol. 16, no. 7, pp. 1415-1422, Oct. 2012. [URL]
B. Wylie, D. Dunlavy, W. Davis, and J. Baumes, "Using NoSQL databases for streaming network analysis," in Proceedings of the IEEE Symposium on Large Data Analysis and Visualization, 2012. [URL]
N. Cuntoor, R. Collins, and A. Hoogs, "Human-robot teamwork using activity recognition and human instruction," in Proceedings of the IEEE/RSJ International Conference on Intelligent Robots and Systems, 2012. [URL]
B. Rocque, D. Jackson, T. Varghese, B. Hermann, M. McCormick, M. Kliewer, C. Mitchell, and R. Dempsey, "Impaired cognitive function in patients with atherosclerotic carotid stenosis and correlation with ultrasound strain measurements," Journal of the Neurological Sciences, vol. 322, no. 1-2, pp. 20-24, Nov. 2012. [URL]
A. Fedorov, R. Beichel, J. Kalpathy-Cramer, J. Finet, J. Fillion-Robin, S. Pujol, C. Bauer, D. Jennings, F. Fennessy, M. Sonka, J. Buatti, S. Aylward, J. Miller, S. Pieper, and R. Kikinis, "3D Slicer as an image computing platform for the Quantitative Imaging Network," Magnetic Resonance Imaging, vol. 30, no. 9, pp. 1323-1341, Nov. 2012. [URL]
M. McCormick, T. Varghese, X. Wang, C. Mitchell, M. Kliewer, and R. Dempsey, "Methods for robust in vivo strain estimation in the carotid artery," Physics in Medicine and Biology, vol. 57, no. 22, pp. 7329-7353, Nov. 2012. [URL]
K. Moreland, B. King, R. Maynard, and K. Ma, "Flexible Analysis Software for Emerging Architectures," in SC Companion: High Performance Computing, Networking Storage and Analysis, 2012. [URL]
C. Sewell, J. Meredith, K. Moreland, T. Peterka, D. DeMarle, L. Lo, J. Ahrens, R. Maynard, and B. Geveci, "The SDAV Software Frameworks for Visualization and Analysis on Next-Generation Multi-Core and Many-Core Architectures," in SC Companion: High Performance Computing, Networking Storage and Analysis, 2012. [URL]
E. Smith, R. Radke, and C. Stewart, "Physical Scale Keypoints: Matching and Registration for Combined Intensity/Range Images," International Journal of Computer Vision, vol. 97, no. 1, pp. 2-17, Mar. 2012. [URL]
T. Kapur, S. Pieper, R. Whitaker, S. Aylward, M. Jakab, W. Schroeder, and R. Kikinis, "The National Alliance for Medical Image Computing, a roadmap initiative to build a free and open source software infrastructure for translational research in medical image analysis," Journal of the American Medical Informatics Association, vol. 19, no. 2, pp. 176-180, Mar. 2012. [URL]
P. Marion, R. Kwitt, B. Davis, and M. Gschwandtner, "PCL and ParaView — Connecting the dots," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshop on Point Cloud Processing, 2012. [URL]
E. Swears and A. Hoogs, "Learning and recognizing complex multi-agent activities with applications to american football plays," in Proceedings of the IEEE Workshop on Applications of Computer Vision, 2012. [URL]
A. Choudhury, B. Wang, P. Rosen, and V. Pascucci, "Topological analysis and visualization of cyclical behavior in memory reference traces," in IEEE Pacific Visualization Symposium, 2012. [URL]
A. Vaccarella, E. De Momi, M. Valenti, G. Ferrigno, and A. Enquobahrie, "Application of unscented Kalman filter for robust pose estimation in image-guided surgery," in SPIE Medical Imaging, 2012. [URL]
H. Lee, M. Audette, G. Joldes, and A. Enquobahrie, "Neurosurgery simulation using non-linear finite element modeling and haptic interaction," in SPIE Medical Imaging, 2012. [URL]
R. Gessner, S. Aylward, and P. Dayton, "Imaging tortuosity: the potential utility of acoustic angiography in cancer detection and tumor assessment," Imaging in Medicine, vol. 4, no. 6, pp. 581-583, Dec. 2012. [URL]
X. Wu, J. Yao, A. Enquobahrie, H. Lee, and M. Audette, "Integration of a Multigrid ODE solver into an open medical simulation framework," in International Conference of the IEEE Engineering in Medicine and Biology Society, 2012. [URL]
C. Brislawn, J. Woodring, S. Mniszewski, D. DeMarle, and J. Ahrens, "Subband coding for large-scale scientific simulation data using JPEG 2000," in 2012 IEEE Southwest Symposium on Image Analysis and Interpretation, 2012. [URL]
B. Avants, N. Tustison, G. Song, B. Wu, M. Stauffer, M. McCormick, H. Johnson, and J. Gee, "A Unified Image Registration Framework for ITK," in Biomedical Image Registration. Springer Berlin Heidelberg, 2012, pp. 266-275. [URL]
V. Pascucci, G. Scorzelli, B. Summa, P. Bremer, A. Gyulassy, C. Christensen, S. Philip, and S. Kumar, "The ViSUS Visualization Framework," in High Performance Visualization, 1st Edition. Chapman and Hall/CRC, 2012, pp. 14. [URL]
D. DeMarle, B. Geveci, J. Woodring, and J. Ahrens, "Streaming and out-of-core methods," in High Performance Visualization: Enabling Extreme-Scale Scientific Insight. CRC Press, 2012, pp. 199-218.
M. Hanwell, D. Curtis, A. Vacanti, T. Vandermeersch, E. Zurek, and G. Hutchison, "Avogadro: an advanced semantic chemical editor, visualization, and analysis platform," Journal of Cheminformatics, vol. 4, no. 1, pp. 17, 2012. [URL]
A. Chaudhary, B. Sherman, and E. Whiting, "Immersive ParaView experiences at Idaho National Laboratory," Kitware Source, no. 23, 2012.
R. Blue, A. Chaudhary, B. Payne, and M. Woehlke, "VisGUI: A visualization framework for video analysis," Kitware Source, no. 23, 2012.
A. Irimia, B. Wang, S. Aylward, M. Prastawa, D. Pace, G. Gerig, D. Hovda, R. Kikinis, P. Vespa, and J. Van Horn, "Neuroimaging of structural pathology and connectomics in traumatic brain injury: Toward personalized outcome prediction," NeuroImage: Clinical, vol. 1, no. 1, pp. 1-17, 2012. [URL]
E. Smith, "Registration of combined range-intensity scans," Ph.D. dissertation, Rensselaer Polytechnic Institute, 2012.
K. Moreland, J. Meredith, and B. Geveci, "Enabling production-quality scientific-discovery tools with data and execution models," Sandia National Laboratories, SAND 2012-10796P, 2012.
N. Fabian, A. Bauer, R. Podhorszki, and U. Ayachit, "In-Situ Visualization with Catalyst," presented at Supercomputing Tutorials, 2012.
B. Geveci and W. Schroeder, "VTK," in The Architecture of Open Source Applications. lulu.com, 2012, pp. online. [URL]
X. Liu, B. Helba, K. Krishnan, P. Reynolds, M. McCormick, W. Turner, L. Ibanez, D. Yankelevitz, and R. Avila, "Fostering open science in lung cancer lesion sizing with ITK module LSTK," The Insight Journal, 2012. [URL]
A. Choudhury, "Visualizing Program Memory Behavior Using Memory Reference Traces," Ph.D. dissertation, University of Utah, 2012.
E. Swears, M. Turek, R. Collins, A. Perera, and A. Hoogs, "Automatic activity profile generation from detected functional regions for video scene analysis," in Video Analytics for Business Intelligence. Springer, 2012, pp. 241-269. [URL]
D. Testi, D. Giunchi, G. Clapworthy, S. Aylward, X. Planes, and R. Christie, "New interactive visualisation of multiscale biomedical data," in ACM SIGGRAPH 2012 Posters on - SIGGRAPH '12, 2012. [URL]
D. Pace, M. Niethammer, and S. Aylward, "Sliding Geometries in Deformable Image Registration," in Abdominal Imaging. Computational and Clinical Applications, 2012. [URL]
I. Csapo, B. Davis, Y. Shi, M. Sanchez, M. Styner, and M. Niethammer, "Temporally-Dependent Image Similarity Measure for Longitudinal Analysis," in Biomedical Image Registration, 2012. [URL]
C. Brownlee, J. Patchett, L. Lo, D. DeMarle, C. Mitchell, J. Ahrens, and C. Hansen, "A study of ray tracing large-scale scientific data in parallel visualization applications," in Eurographics Symposium on Parallel Graphics and Visualization, 2012.
E. Wernert, W. Sherman, P. O'Leary, and E. Whiting, "A common path forward for the immersive visualization community," in IEEE VR Workshop on Immersive Visualization, 2012.
A. Perera, S. Oh, M. P, T. Ma, A. Hoogs, A. Vahdat, K. Cannons, G. Mori, S. Mccloskey, B. Miller, S. Venkatesh, P. Davalos, P. Das, C. Xu, J. Corso, R. Srihari, I. Kim, Y. Cheng, Z. Huang, C. Lee, K. Tang, L. Fei-fei, and D. Koller, "TRECVID 2012 GENIE: multimedia event detection and recounting," in NIST TRECVID Workshop, 2012.
I. Csapo, B. Davis, Y. Shi, M. Sanchez, M. Sanchez, M. Styner, and M. Niethammer, "Longitudinal Image Registration with Non-Uniform Appearance Change," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2012.
R. Kwitt, N. Vasconcelos, S. Razzaque, and S. Aylward, "Recognition in Ultrasound Videos: Where Am I?," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2012. [URL]
K. Moreland, N. Fabian, B. Geveci, U. Ayachit, and J. Ahrens, "Next-generation capabilities for large-scale scientific visualization," in SIAM Conference on Parallel Processing for Scientific Computing, 2012.
H. Vo, J. Comba, B. Geveci, and C. Silva, "Streaming-Enabled Parallel Data Flow Framework in the Visualization ToolKit," Computing in Science & Engineering, vol. 13, no. 5, pp. 72-83, Sep. 2011. [URL]
J. Shepherd, J. Baumes, and A. Chaudhary, "Geospatial and entity driven document visualization for non-proliferation analysis," in Geospatial and Entity Driven Document Visualization for Non-proliferation Analysis, 2011.
J. Woodring, S. Mniszewski, C. Brislawn, D. DeMarle, and J. Ahrens, "Revisiting wavelet compression for large-scale climate data using JPEG 2000 and ensuring data precision," in 2011 IEEE Symposium on Large Data Analysis and Visualization, 2011. [URL]
K. Moreland, U. Ayachit, B. Geveci, and K. Ma, "Dax Toolkit: A proposed framework for data analysis and visualization at Extreme Scale," in Proceedings of the IEEE Symposium on Large Data Analysis and Visualization, 2011. [URL]
N. Fabian, K. Moreland, D. Thompson, A. Bauer, P. Marion, B. Geveci, M. Rasquin, and K. Jansen, "The ParaView Coprocessing Library: A scalable, general purpose in situ visualization library," in Proceedings of the IEEE Symposium on Large Data Analysis and Visualization, 2011. [URL]
A. Chaudhary and J. Baumes, "Is what you see what you get? Geospatial visualizations address scale and usability (Industry Trends)," GEO World, vol. 24, no. 5, May 2011.
M. Audette, D. Rivière, C. Law, L. Ibanez, S. Aylward, J. Finet, X. Wu, and M. Ewend, "Approach-specific multi-grid anatomical modeling for neurosurgery simulation with public-domain and open-source software," in Proceedings of SPIE--the International Society for Optical Engineering, 2011.
D. Pace, A. Enquobahrie, H. Yang, S. Aylward, and M. Niethammer, "Deformable image registration of sliding organs using anisotropic diffusive regularization," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2011. [URL]
N. Shetty, A. Chaudhary, D. Coming, W. Sherman, P. O'Leary, E. Whiting, and S. Su, "Immersive ParaView: A community-based, immersive, universal scientific visualization application," in Proceedings of the IEEE Virtual Reality Conference, 2011. [URL]
M. McCormick, N. Rubert, and T. Varghese, "Bayesian Regularization Applied to Ultrasound Strain Imaging," IEEE Transactions on Biomedical Engineering, vol. 58, no. 6, pp. 1612-1620, Jun. 2011. [URL]
S. Oh, A. Hoogs, A. Perera, N. Cuntoor, C. Chen, J. Lee, S. Mukherjee, J. Aggarwal, H. Lee, L. Davis, E. Swears, X. Wang, Q. Ji, K. Reddy, M. Shah, C. Vondrick, H. Pirsiavash, D. Ramanan, J. Yuen, A. Torralba, B. Song, A. Fong, A. Roy-Chowdhury, and M. Desai, "A large-scale benchmark dataset for event recognition in surveillance video," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2011. [URL]
M. McCormick, "A lightweight image comparison library," Kitware Source, no. 16, Jan. 2011.
A. Basharat, W. Turner, G. Stephens, B. Badillo, R. Lumpkin, P. Andre, and A. Perera, "Tracking flow of leukocytes in blood for drug analysis," in SPIE Real-Time Image and Video Processing, 2011. [URL]
S. Philip, B. Summa, V. Pascucci, and P. Bremer, "Hybrid CPU-GPU Solver for Gradient Domain Processing of Massive Images," in 2011 IEEE 17th International Conference on Parallel and Distributed Systems, 2011. [URL]
M. Dawkins and C. Stewart, "Scallop detection in multiple maritime environments," Rensselaer Polytechnic Institute, 2011.
K. Gary, A. Enquobahrie, L. Ibanez, P. Cheng, Z. Yaniv, K. Cleary, S. Kokoori, B. Muffih, and J. Heidenreich, "Agile methods for open source safety-critical software," Software: Practice and Experience, vol. 41, no. 9, pp. 945-962, Aug. 2011. [URL]
M. McCormick, E. Madsen, M. Deaner, and T. Varghese, "Absolute backscatter coefficient estimates of tissue-mimicking phantoms in the 5–50 MHz frequency range," The Journal of the Acoustical Society of America, vol. 130, no. 2, pp. 737-743, Aug. 2011. [URL]
M. McCormick, E. Madsen, M. Deaner, and T. Varghese, "Absolute backscatter coefficient estimates of tissue-mimicking phantoms in the 5–50 MHz frequency range," The Journal of the Acoustical Society of America, vol. 130, no. 2, pp. 737-743, Aug. 2011. [URL]
A. Vaccarella, M. Comparetti, A. Enquobahrie, G. Ferrigno, and E. De Momi, "Sensors management in robotic neurosurgery: The ROBOCAST project," in International Conference of the IEEE Engineering in Medicine and Biology Society, 2011. [URL]
E. Swears and A. Hoogs, "Complex Activity Recognition using Granger Constrained Dynamic Bayesian Network," in Learning Workshop, Fort Lauderdale Florida, 2011.
S. Philip, B. Summa, P. Bremer, and V. Pascucci, "Parallel Gradient Domain Processing of Massive Images," Eurographics Symposium on Parallel Graphics and Visualization, pp. 9 pages, 2011. [URL]
N. O'Boyle, R. Guha, E. Willighagen, S. Adams, J. Alvarsson, J. Bradley, I. Filippov, R. Hanson, M. Hanwell, G. Hutchison, C. James, N. Jeliazkova, A. Lang, K. Langner, A. Vacanti, D. Lowe, J. Pansanel, D. Pavlov, O. Spjuth, C. Steinbeck, A. Tenderholt, K. Theisen, and P. Murray-Rust, "Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on," Journal of Cheminformatics, vol. 3, no. 1, pp. 37, 2011. [URL]
S. Adams, P. de Castro, P. Echenique, J. Estrada, M. Hanwell, P. Murray-Rust, P. Sherwood, J. Thomas, and J. Townsend, "The Quixote project: Collaborative and Open Quantum Chemistry data management in the Internet age," Journal of Cheminformatics, vol. 3, no. 1, pp. 38, 2011. [URL]
B. Davis and B. Hoffman, "Issue RADAR Using Git/Master/Mantis," Kitware Source, 2011.
H. Yang, M. Audette, A. Enquobahrie, J. Finet, and S. Barre, "The Application of Textbook-Based Surgical Ontologies to Neurosurgery Simulation Requirements," in Computer Assisted Radiology and Surgery: Proceedings of the International Congress and Exhibition, 2011.
A. Perera, S. Oh, M. Leotta, I. Kim, B. Byun, C. Lee, S. McCloskey, B. Miller, Z. Huang, A. Vahdat, W. Yang, G. Mori, K. Tang, D. Koller, L. Fei-Fei, K. Li, G. Chen, J. Corso, Y. Fu, R. Srihari, Y. Fu, and R. Srihari, "GENIE TRECVID 2011 Multimedia Event Detection : Late-Fusion Approaches to Combine Multiple Audio-Visual features," in NIST TRECVID Workshop, 2011.
M. Niethammer, G. Hart, D. Pace, P. Vespa, A. Irimia, J. Van Horn, and S. Aylward, "Geometric Metamorphosis," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2011. [URL]
J. Jomier, S. Jourdain, U. Ayachit, and C. Marion, "Remote visualization of large datasets with MIDAS and ParaViewWeb," in Proceedings of the International Conference on 3D Web Technology, 2011. [URL]
K. Moreland, M. Hereld, M. Papka, S. Klasky, R. Oldfield, P. Marion, S. Jourdain, N. Podhorszki, V. Vishwanath, N. Fabian, C. Docan, and M. Parashar, "Examples of in transit visualization," in Proceedings of the international workshop on Petascal data analytics: challenges and opportunities, 2011. [URL]
K. Moreland, N. Fabian, S. Klasky, and B. Geveci, "Flexible in situ with ParaView," in Workshop on Ultrascale Visualization, 2011.
M. Turek, A. Hoogs, and R. Collins, "Unsupervised Learning of Functional Categories in Video Scenes," in Proceedings of the European Conference on Computer Vision, 2010. [URL]
E. Madsen, G. Frank, M. McCormick, M. Deaner, and T. Stiles, "Anechoic sphere phantoms for estimating 3-D resolution of very-high-frequency ultrasound scanners," IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, vol. 57, no. 10, pp. 2284-2292, Oct. 2010. [URL]
R. Gessner, R. Kothadia, S. Feingold, S. Aylward, E. Bullitt, and P. Dayton, "Blood vessel structural morphology derived from 3D dual-frequency ultrasound images," in 2010 IEEE International Ultrasonics Symposium, 2010. [URL]
J. Ahrens, K. Heitmann, M. Petersen, J. Woodring, S. Williams, P. Fasel, C. Ahrens, C. Hsu, and B. Geveci, "Verifying Scientific Simulations via Comparative and Quantitative Visualization," IEEE Computer Graphics and Applications, vol. 30, no. 6, pp. 16-28, Nov. 2010. [URL]
W. Jeong, J. Beyer, M. Hadwiger, R. Blue, C. Law, A. Vazquez-Reina, R. Reid, J. Lichtman, and H. Pfister, "Ssecrett and NeuroTrace: Interactive Visualization and Analysis Tools for Large-Scale Neuroscience Data Sets," IEEE Computer Graphics and Applications, vol. 30, no. 3, pp. 58-70, May 2010. [URL]
M. Audette, A. Kolahi, A. Enquobahrie, C. Gatti, and K. Cleary, "Reducing depth uncertainty in large surgical workspaces, with applications to veterinary medicine," in SPIE Medical Imaging, 2010. [URL]
X. Luo, M. Shephard, L. Yin, R. O’Bara, R. Nastasi, and M. Beall, "Construction of near optimal meshes for 3D curved domains with thin sections and singularities for p-version method," Engineering with Computers, vol. 26, no. 3, pp. 215-229, Jun. 2010. [URL]
Z. Sun and A. Hoogs, "Image comparison by compound disjoint information with applications to perceptual visual quality assessment, image registration and tracking," International Journal of Computer Vision, vol. 88, no. 3, pp. 461-488, Jul. 2010. [URL]
N. Cowlam, A. Wildes, M. Hanwell, N. Dearing, and A. Jenner, "Non-collinear ferrimagnetism in a Fe ₆₄ Er ₁₉ B ₁₇ metallic glass," Journal of Physics: Condensed Matter, vol. 22, no. 29, pp. 296003, Jul. 2010. [URL]
K. Krishnan, L. Ibanez, W. Turner, J. Jomier, and R. Avila, "An open-source toolkit for the volumetric measurement of CT lung lesions," Optics Express, vol. 18, no. 14, pp. 15256, Jul. 2010. [URL]
E. Bullitt, D. Zeng, B. Mortamet, A. Ghosh, S. Aylward, W. Lin, B. Marks, and K. Smith, "The effects of healthy aging on intracerebral blood vessels visualized by magnetic resonance angiography," Neurobiology of Aging, vol. 31, no. 2, pp. 290-300, Feb. 2010. [URL]
M. Hanwell, T. Madison, and G. Hutchison, "Charge Transport in Imperfect Organic Field Effect Transistors: Effects of Explicit Defects and Electrostatics," The Journal of Physical Chemistry C, vol. 114, no. 48, pp. 20417-20423, Dec. 2010. [URL]
N. Cuntoor, A. Basharat, A. Perera, and A. Hoogs, "Track Initialization in Low Frame Rate and Low Resolution Videos," in Proceedings of the IEEE International Conference on Pattern Recognition, 2010. [URL]
S. Oh and A. Hoogs, "Unsupervised Learning of Activities in Video Using Scene Context," in Proceedings of the IEEE International Conference on Pattern Recognition, 2010. [URL]
M. McCormick, "Visual debugging of ITK," Kitware Source, no. 13, Apr. 2010.
M. Leotta, "Generic, deformable models for 3-d vehicle surveillance," Brown University, 2010.
M. McCormick, "An Open Source, Fast Ultrasound B-Mode Implementation for Commodity Hardware," Insight Jounral, no. January-June 2010, 2010. [URL]
M. McCormick, "Higher Order Accurate Derivative and Gradient Calculation in ITK," Insight Journal, no. July-December 2010, 2010. [URL]
B. King and W. Hoffman, "Distributed version control: The future of history," Kitware Source, no. 15, 2010.
D. DeMarle and J. Woodring, "Multi-Resolution Streaming in VTK and ParaView," Kitware Source, no. 15, 2010.
L. Lo and D. DeMarle, "Rendered realism at (nearly) real time rates," Kitware Source, no. 14, 2010.
Z. Sun, R. Kaucic, P. Mendoca, and A. Can, "A Statistical Approach to Industrial Anomaly Detection," in European Conference on Nondestructive Testing, 2010.
S. Jourdain, U. Ayachit, and B. Geveci, "ParaViewWeb, a web framework for 3D visualization and data processing," in IADIS International Conference on Visual Communication, 2010.
X. Liu, B. Davis, M. Niethammer, S. Pizer, and G. Mageras, "Prediction-driven Respiratory Motion Atlas Formation for 4D Image- guided Radiation Therapy in Lung," in MICCAI Workshop on Pulmonary Image Analysis, 2010.
S. Oh, A. Hoogs, M. Turek, and R. Collins, "Content-Based Retrieval of Functional Objects in Video Using Scene Context," in Proceedings of the European Conference on Computer Vision, 2010. [URL]
A. Basharat and M. Shah, "Time series prediction by chaotic modeling of nonlinear dynamical systems," in Proceedings of the IEEE International Conference on Computer Vision, 2009. [URL]
J. Becker, C. Stewart, and R. Radke, "LiDAR inpainting from a single image," in Proceedings of the IEEE International Conference on Computer Vision Workshops, 2009. [URL]
D. DeMarle and U. Ayachit, "Customizing ParaView," in IEEE Vis 2009, 2009.
G. Piliere, M. Van Horn, R. Dixon, J. Stavas, S. Aylward, and E. Bullitt, "Vessel target location estimation during the TIPS procedure," Medical Image Analysis, vol. 13, no. 3, pp. 519-529, Jun. 2009. [URL]
A. Hines, S. Howington, B. White, O. Eslinger, C. Kees, M. Farthing, R. O'Bara, R. Blue, Y. Yuan, A. Bauer, and B. King, "Computational Model Builder (CMB): A Cross-Platform Suite of Tools for Model Creation and Setup," in DoD High Performance Computing Modernization Program Users Group Conference, 2009. [URL]
M. Leotta and J. Mundy, "Predicting high resolution image edges with a generic, adaptive, 3-D vehicle model," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshops, 2009. [URL]
B. Wylie and J. Baumes, "A unified toolkit for information and scientific visualization," in IS&T/SPIE Electronic Imaging, 2009. [URL]
J. Jomier, S. Aylward, C. Marion, J. Lee, and M. Styner, "A digital archiving system and distributed server-side processing of large datasets," in SPIE Medical Imaging, 2009. [URL]
J. Jomier, L. Ibanez, A. Enquobahrie, D. Pace, and K. Cleary, "An open-source framework for testing tracking devices using Lego Mindstorms," in SPIE Medical Imaging, 2009. [URL]
J. Lee, J. Jomier, S. Aylward, M. Tyszka, S. Moy, J. Lauder, and M. Styner, "Evaluation of atlas based mouse brain segmentation," in SPIE Medical Imaging, 2009. [URL]
H. Shi, T. Varghese, C. Mitchell, M. McCormick, R. Dempsey, and M. Kliewer, "In vivo attenuation and equivalent scatterer size parameters for atherosclerotic carotid plaque: Preliminary results," Ultrasonics, vol. 49, no. 8, pp. 779-785, Dec. 2009. [URL]
E. Swears and A. Hoogs, "Functional scene element recognition for video scene analysis," in Proceedings of the IEEE Workshop on Motion and Video Computing, 2009. [URL]
E. Bullitt, M. Ewend, J. Vredenburgh, A. Friedman, W. Lin, K. Wilber, D. Zeng, S. Aylward, and D. Reardon, "Computerized assessment of vessel morphological changes during treatment of glioblastoma multiforme: Report of a case imaged serially by MRA over four years," NeuroImage, vol. 47, pp. T143-T151, Aug. 2009. [URL]
K. Cleary, P. Cheng, A. Enquobahrie, and Z. Yaniv, IGSTK: The book. Signature Book Printing, 2009.
J. Ahrens, J. Woodring, D. DeMarle, J. Patchett, and M. Maltrud, "Interactive remote large-scale data visualization via prioritized multi-resolution streaming," in Proceedings of the 2009 Workshop on Ultrascale Visualization - UltraVis '09, 2009. [URL]
A. Perera, R. Collins, and A. Hoogs, "Evaluation of compression schemes for wide area video," in Proceedings of the IEEE Applied Imagery Pattern Recognition Workshop, 2008. [URL]
A. Enquobahrie, D. Gobbi, M. Turek, P. Cheng, Z. Yaniv, F. Lindseth, and K. Cleary, "Designing tracking software for image-guided surgery applications: IGSTK experience," International Journal of Computer Assisted Radiology and Surgery, vol. 3, no. 5, pp. 395-403, Nov. 2008. [URL]
H. Shi, C. Mitchell, M. McCormick, M. Kliewer, R. Dempsey, and T. Varghese, "Preliminary in vivo atherosclerotic carotid plaque characterization using the accumulated axial strain and relative lateral shift strain indices," Physics in Medicine and Biology, vol. 53, no. 22, pp. 6377-6394, Nov. 2008. [URL]
I. Oguz, J. Cates, T. Fletcher, R. Whitaker, D. Cool, S. Aylward, and M. Styner, "Cortical correspondence using entropy-based particle systems and local features," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2008. [URL]
Z. Zhao, D. Wallace, S. Freedman, and S. Aylward, "A tool for computer-aided diagnosis of retinopathy of prematurity," in Medical Imaging, 2008. [URL]
O. Solberg, G. Tangen, F. Lindseth, T. Sandnes, A. Enquobahrie, L. Ibáñez, P. Cheng, D. Gobbi, and K. Cleary, "Integration of a real-time video grabber component with the open source image-guided surgery toolkit IGSTK," in SPIE Medical Imaging, 2008. [URL]
B. Wylie, J. Baumes, and T. Shead, "G-Space: a linear time graph layout," in IS&T International Symposium on Electronic Imaging, 2008. [URL]
A. Cedilnik, J. Baumes, L. Ibanez, S. Megason, and B. Wylie, "Integration of information and volume visualization for analysis of cell lineage and gene expression during embryogenesis," in IS&T International Symposium on Electronic Imaging, 2008. [URL]
A. Hoogs, S. Bush, G. Brooksby, A. Perera, M. Dausch, and N. Krahnstoever, "Detecting Semantic Group Activities Using Relational Clustering," in Proceedings of the IEEE Workshop on Motion and Video Computing, 2008. [URL]
E. Swears, A. Hoogs, and A. Perera, "Learning Motion Patterns in Surveillance Video using HMM Clustering," in Proceedings of the IEEE Workshop on Motion and Video Computing, 2008. [URL]
K. Martin, B. Hoffman, and A. Cedilnik, Mastering CMake: a cross-platform build system, 4. ed. Kitware, 2008.
K. Moreland, D. Rogers, J. Greenfield, B. Geveci, P. Marion, A. Neundorf, and K. Eschenberg, "Large Scale Visualization on the Cray XT3 Using ParaView," in Cray User Group, 2008.
E. Bullitt, S. Aylward, T. Van Dyke, and W. Lin, "Computer-assisted measurement of vessel shape from 3T magnetic resonance angiography of mouse brain," Methods, vol. 43, no. 1, pp. 29-34, Sep. 2007. [URL]
F. Wheeler and A. Hoogs, "Moving Vehicle Registration and Super-Resolution," in Proceedings of the IEEE Applied Imagery Pattern Recognition Workshop, 2007. [URL]
P. Crossno, B. Wylie, A. Wilson, J. Greenfield, E. Stanton, T. Shead, L. Ice, K. Moreland, J. Baumes, and B. Geveci, "Intelligence Analysis Using Titan," in Proceedings of the IEEE Symposium on Visual Analytics Science and Technology, 2007. [URL]
J. Biddiscombe, B. Geveci, K. Martin, K. Moreland, and D. Thompson, "Time Dependent Processing in a Parallel Pipeline Architecture," IEEE Transactions on Visualization and Computer Graphics, vol. 13, no. 6, pp. 1376-1383, Nov. 2007. [URL]
A. Enquobahrie, P. Cheng, K. Gary, L. Ibanez, D. Gobbi, F. Lindseth, Z. Yaniv, S. Aylward, J. Jomier, and K. Cleary, "The Image-Guided Surgery Toolkit IGSTK: An Open Source C++ Software Toolkit," Journal of Digital Imaging, vol. 20, no. S1, pp. 21-33, Nov. 2007. [URL]
A. Enquobahrie, A. Reeves, D. Yankelevitz, and C. Henschke, "Automated Detection of Small Pulmonary Nodules in Whole Lung CT Scans," Academic Radiology, vol. 14, no. 5, pp. 579-593, May 2007. [URL]
P. Cheng, L. Ibanez, D. Gobbi, K. Gary, S. Aylward, J. Jomier, A. Enquobahrie, H. Zhang, H. Kim, M. Blake, and K. Cleary, "The Image-Guided Surgery ToolKit IGSTK: an open source C++ software toolkit," in SPIE Medical Imaging, 2007. [URL]
K. Martin and B. Hoffman, "An Open Source Approach to Developing Software in a Small Organization," IEEE Software, vol. 24, no. 1, pp. 46-53, Jan. 2007. [URL]
S. DiMaio, T. Kapur, K. Cleary, S. Aylward, P. Kazanzides, K. Vosburgh, R. Ellis, J. Duncan, K. Farahani, H. Lemke, T. Peters, W. Lorensen, D. Gobbi, J. Haller, L. Clarke, S. Pizer, R. Taylor, R. Galloway, G. Fichtinger, N. Hata, K. Lawson, C. Tempany, R. Kikinis, and F. Jolesz, "Challenges in image-guided therapy system design," NeuroImage, vol. 37, pp. S144-S151, Jan. 2007. [URL]
J. Ahrens, N. Desai, P. McCormick, K. Martin, and J. Woodring, "A modular extensible visualization system architecture for culled prioritized data streaming," in Electronic Imaging 2007, 2007. [URL]
K. Moreland, L. Avila, and L. Fisk, "Parallel unstructured volume rendering in ParaView," in IS&T International Symposium on Electronic Imaging, 2007. [URL]
S. Aylward, J. Jomier, S. Barre, B. Davis, and L. Ibanez, "Optimizing ITK's Registration Methods for Multi-processor, Shared-memory Systems," in MICCAI Workshop on Open Source and Open Data, 2007.
J. Baumes, M. Goldberg, M. Magdon-Ismail, and W. Wallace, "Identification of hidden groups in communications," in Handbooks in Information Systems, Volume 2: National Security. Elsevier, 2007, pp. 209-242.
J. Biddiscombe, B. Geveci, and K. Martin, "A Pipeline Architecture for Parallel Processing of Time-Dependent Data within a VTK Framework," in Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization, 2007.
B. Davis, P. Fletcher, E. Bullitt, and S. Joshi, "Population Shape Regression From Random Design Data," in Proceedings of the IEEE International Conference on Computer Vision, 2007. Winner, Marr Prize Best Paper Award. [URL]
M. Koenig, W. Spindler, J. Rexilius, J. Jomier, F. Link, and H. Peitgen, "Embedding VTK and ITK into a visual programming and rapid prototyping platform," in Medical Imaging, 2006. [URL]
P. Cheng, H. Zhang, H. Kim, K. Gary, M. Blake, D. Gobbi, S. Aylward, J. Jomier, A. Enquobahrie, R. Avila, L. Ibanez, and K. Cleary, "IGSTK: Framework and example application using an open source toolkit for image-guided surgery applications," in SPIE Medical Imaging, 2006. [URL]
W. Schroeder, F. Bertel, M. Malaterre, D. Thompson, P. Pebay, R. O'Bara, and S. Tendulkar, "Methods and framework for visualizing higher-order finite elements," IEEE Transactions on Visualization and Computer Graphics, vol. 12, no. 4, pp. 446-460, Jul. 2006. [URL]
E. Blasch, H. Ling, D. Shen, G. Chen, R. Hammound, A. Basharat, R. Collins, A. Aved, and J. Nagy, "Video-to-text information fusion evaluation for level 5 user refinement," in 2015 18th International Conference on Information Fusion (Fusion), 2006.
K. Gary, L. Ibanez, S. Aylward, D. Gobbi, M. Blake, and K. Cleary, "IGSTK: An Open Source Software Toolkit for Image-Guided Surgery," Computer, vol. 39, no. 4, pp. 46-53, Apr. 2006. [URL]
J. Baumes, "Algorithms for discovering hidden groups in communications," Ph.D. dissertation, Rensselaer Polytechnic Institute, 2006.
W. Schroeder, L. Avila, K. Martin, W. Hoffman, and C. Law, The VTK User's Guide. Kitware, 2006.
W. Schroeder, K. Martin, B. Lorensen, L. Sobierajski, R. Avila, and C. Law, Visualization Toolkit: An Object-Oriented Approach to 3D Graphics, 4th. Kitware, 2006.
S. Pieper, B. Lorensen, W. Schroeder, and R. Kikinis, "The NA-MIC Kit: ITK, VTK, Pipelines, Grids and 3D Slicer as An Open Platform for the Medical Image Computing Community," in 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, 2006., 2006. [URL]
A. Cedilnik, B. Geveci, K. Moreland, J. Ahrens, and J. Favre, "Remote Large Data Visualization in the ParaView Framework," in Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization, 2006. [URL]
L. Ibanez, R. Avila, and S. Aylward, "Open Source and Open Science: How it is Changing the Medical Imaging Community," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2006. [URL]
J. Jomier, E. Bullitt, M. Van Horn, C. Pathak, and S. Aylward, "3D/2D Model-to-Image Registration Applied to TIPS Surgery," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2006. [URL]
E. Bullitt, D. Zeng, G. Gerig, S. Aylward, S. Joshi, J. Smith, W. Lin, and M. Ewend, "Vessel Tortuosity and Brain Tumor Malignancy," Academic Radiology, vol. 12, no. 10, pp. 1232-1240, Oct. 2005. [URL]
S. Aylward, K. Cleary, and D. Hawkes, "Intraoperative Image Processing for Surgical Guidance," IEEE Transactions on Medical Imaging, vol. 24, no. 11, pp. 1401-1404, Nov. 2005. [URL]
E. Cole, E. Pisano, D. Zeng, K. Muller, S. Aylward, S. Park, C. Kuzmiak, M. Koomen, D. Pavic, R. Walsh, J. Baker, E. Gimenez, and R. Freimanis, "The Effects of Gray Scale Image Processing on Digital Mammography Interpretation Performance1," Academic Radiology, vol. 12, no. 5, pp. 585-595, May 2005. [URL]
E. Bullitt, K. Muller, I. Jung, W. Lin, and S. Aylward, "Analyzing attributes of vessel populations," Medical Image Analysis, vol. 9, no. 1, pp. 39-49, Feb. 2005. [URL]
D. DeMarle, C. Gribble, S. Boulos, and S. Parker, "Memory sharing for interactive ray tracing on clusters," Parallel Computing, vol. 31, no. 2, pp. 221-242, Feb. 2005. [URL]
K. Martin, L. Ibáñez, L. Avila, S. Barré, and J. Kaspersen, "Integrating segmentation methods from the Insight Toolkit into a visualization application," Medical Image Analysis, vol. 9, no. 6, pp. 579-593, Dec. 2005. [URL]
D. Shelton, G. Stetten, S. Aylward, L. Ibáñez, A. Cois, and C. Stewart, "Teaching medical image analysis with the Insight Toolkit," Medical Image Analysis, vol. 9, no. 6, pp. 605-611, Dec. 2005. [URL]
E. Bullitt and S. Aylward, "Visualizing blood vessel trees in three dimensions: clinical applications," in Medical Imaging, 2005. [URL]
J. Rexilius, J. Jomier, W. Spindler, F. Link, M. König, and H. Peitgen, "Combining a Visual Programming and Rapid Prototyping Platform with ITK," in Bildverarbeitung für die Medizin 2005. Springer-Verlag, 2005, pp. 460-464. [URL]
J. Ahrens, B. Geveci, and C. Law, "ParaView: An End-User Tool for Large-Data Visualization," in The Visualization Handbook. Academic Press, 2005, pp. 717-731.
W. Schroeder and K. Martin, "Overview of Visualization," in Visualization Handbook. Elsevier, 2005, pp. 3-35. [URL]
L. Ibanez, G. Kindlmann, and S. Aylward, "Hot topics in 3D medical image visualization," in ACM SIGGRAPH 2005 Courses on - SIGGRAPH '05, 2005. [URL]
W. Schroeder, F. Bertel, M. Malaterre, D. Thompson, and P. Pebay, "Framework for Visualizing Higher-Order Basis Functions," in IEEE Visualization, 2005. [URL]
Z. Zhao, S. Aylward, and E. Teoh, "A novel 3D partitioned active shape model for segmentation of brain MR images," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2005.
J. Jomier, V. LeDigarcher, and S. Aylward, "Automatic vascular tree formation using the Mahalanobis distance," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2005.
J. Jomier, V. LeDigarcher, and S. Aylward, "Comparison of Vessel Segmentations Using STAPLE," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2005. [URL]
S. Aylward, J. Jomier, C. Vivert, V. LeDigarcher, and E. Bullitt, "Spatial graphs for intra-cranial vascular network characterization, generation, and discrimination," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2005.
W. Schroeder and M. Shephard, "Computational Visualization," in Encyclopedia of Computational Mechanics. John Wiley & Sons, Ltd, 2004. [URL]
W. Schroeder, L. Ibanez, and K. Martin, "Software Process: The key to developing robust, reusable and maintainable open-source software," in 2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano (IEEE Cat No. 04EX821), 2004. [URL]
W. Schroeder, B. Geveci, and M. Malaterre, "Compatible triangulations of spatial decompositions," in IEEE Visualization, 2004. [URL]
W. Hoffman and K. Martin, "The CMake build manager," Doctor Dobbs Journal, vol. 28, pp. 40-46, Jan. 2003. [URL]
B. King and W. Schroeder, "Automated wrapping of complex c++ code," Dr. Dobb's Journal, Jan. 2003.
L. Ibáñez, W. Schroeder, L. Ng, and J. Cates, The ITK Software Guide. Kitware, Inc., 2003.
J. Ehrhardt, H. Handels, B. Strathmann, T. Malina, W. Plötz, and S. Pöppl, "Atlas-Based Recognition of Anatomical Structures and Landmarks to Support the Virtual Three-Dimensional Planning of Hip Operations," in Medical Image Computing and Computer-Assisted Intervention - MICCAI 2003. Springer Berlin Heidelberg, 2003, pp. 17-24. [URL]
K. Martin, W. Hoffman, and B. Geveci, "Creating Libraries for Multiple Programming Languages," Dr. Dobb's Journal, 2002.
T. Yoo, M. Ackerman, W. Lorensen, W. Schroeder, V. Chalana, S. Aylward, D. Metaxas, and W. Ross, "Engineering and Algorithm Design for an Image Processing API: A Technical Report on ITK - the Insight Toolkit," in Proceedings of the Medicine Meets Virtual Reality Conference, 2002. [URL]
B. Geveci and J. Walker, "Nonlinear resonance of rectangular plates," Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol. 457, no. 2009, pp. 1215-1240, May 2001. [URL]
S. Barre, C. Fernandez-Maloigne, P. Paume, and G. Subrenat, "Three-dimensional visualization system as an aid for facial surgical planning," in SPIE Medical Imaging, 2001. [URL]
R. Machiraju, J. Fowler, D. Thompson, B. Soni, and W. Schroeder, "EVITA — Efficient Visualization and Interrogation of Tera-Scale Data," in Data Mining for Scientific and Engineering Applications. Springer US, 2001, pp. 257-279. [URL]
J. Ahrens, K. Brislawn, K. Martin, B. Geveci, C. Law, and M. Papka, "Large-scale data visualization using parallel data streaming," IEEE Computer Graphics and Applications, vol. 21, no. 4, pp. 34-41, 2001. [URL]
H. Pfister, B. Lorensen, C. Bajaj, G. Kindlmann, W. Schroeder, L. Avila, K. Raghu, R. Machiraju, and J. Lee, "The transfer function bake-off," IEEE Computer Graphics and Applications, vol. 21, no. 1, pp. 16-22, 2001. [URL]
W. Schroeder, L. Avila, and W. Hoffman, "Visualizing with VTK: A tutorial," IEEE Computer Graphics and Applications, vol. 20, no. 5, pp. 20-27, Oct. 2000. [URL]
K. Martin, S. Erne, C. Law, S. Conforto, J. Mallick, and B. Tatar, "Multiple Modality Biomagnetic Analysis System," in Biomag 96. Springer New York, 2000, pp. 1146-1149. [URL]
W. Hoffman and R. Curwen, "Pseudo-incremental linking for c/c++," Dr. Dobb's Journal, 1999.
C. Law, W. Schroeder, K. Martin, and J. Temkin, "A multi-threaded streaming pipeline architecture for large structured data sets," in Proceedings Visualization '99 (Cat. No.99CB37067), 1999. [URL]
C. Hardy, R. Darrow, J. Pauly, A. Ken, C. Dumoulin, B. Hu, and K. Martin, "Interactive coronary MRI," Magnetic Resonance in Medicine, vol. 40, no. 1, pp. 105-111, Jul. 1998. [URL]
L. Hoebel, W. Lorensen, and K. Martin, "Integrating graphics and abstract data to visualize temporal constraints," ACM SIGART Bulletin, vol. 9, no. 3-4, pp. 18-23, Dec. 1998. [URL]
Y. Chiang, C. Silva, and W. Schroeder, "Interactive out-of-core isosurface extraction," in Proceedings Visualization '98 (Cat. No.98CB36276), 1998. [URL]
W. Schroeder and T. Citriniti, "Decimating Polygonal Meshes," Dr. Dobb's Journal, Jul. 1997. [URL]
W. Schroeder, "A topology modifying progressive decimation algorithm," in Proceedings of the IEEE Visualization Conference, 1997. [URL]
W. Schroeder, C. Volpe, and W. Lorensen, "The stream polygon-a technique for 3D vector field visualization," in Proceeding Visualization '91, 1991. [URL]
W. Schroeder and M. Shephard, "A combined octree/delaunay method for fully automatic 3‐D mesh generation," International Journal for Numerical Methods in Engineering, vol. 29, no. 1, pp. 37-55, Jan. 1990. [URL]
W. Schroeder and M. Shephard, "Geometry‐based fully automatic mesh generation and the delaunay triangulation," International Journal for Numerical Methods in Engineering, vol. 26, no. 11, pp. 2503-2515, Nov. 1988. [URL]
M. Shephard, K. Grice, J. Lo, and W. Schroeder, "Trends in automatic three-dimensional mesh generation," Computers & Structures, vol. 30, no. 1-2, pp. 421-429, Jan. 1988. [URL]

Bibliography generated 2024-08-31-04:03:34 (7202)